Jatropha Genome Database

JcCA0281201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.10 - phase: 0 /partial
         (374 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004583 conserved hypothetical protein                          524   e-149

>30076.m004583 conserved hypothetical protein
          Length = 438

 Score =  524 bits (1350), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/321 (78%), Positives = 279/321 (86%), Gaps = 3/321 (0%)

Query: 34  EENRCKFWLTRKNRFCANGRLNDSPFCGNHKSRSDGQWIPCPIDPSHSVLKENLDGHVTR 93
           EE+RCKFWL +KNR CAN  L+DSPFCGNH  R +GQWIPCPID SHSVLKENL+GH+ R
Sbjct: 2   EEHRCKFWLPKKNRSCANTPLSDSPFCGNHTQRCNGQWIPCPIDSSHSVLKENLEGHIKR 61

Query: 94  CPLLKQTQCLSLQPFYQKGINAGKEEEEDITSEMKRNAIYGMTVSEFCKLIKKIESIHAL 153
           CPLLKQTQ LSLQPFYQKGINAGKE+++DITSEMKRNA+Y MTVSEF KLIKKIESIHA 
Sbjct: 62  CPLLKQTQSLSLQPFYQKGINAGKEDDDDITSEMKRNAVYSMTVSEFYKLIKKIESIHAS 121

Query: 154 ICKDIVESYKMPEACNVWIRREIDRKLPFQEKHVKQQASILGNLEDFGALKSYSEKEQCD 213
           +C DI+ES+K+PEACN+WI+REID +LPFQEKHVKQQA+ILGNLEDFG LKS    + CD
Sbjct: 122 LCNDILESFKLPEACNMWIKREIDSQLPFQEKHVKQQAAILGNLEDFGVLKSTLGNKVCD 181

Query: 214 GEGLYLDNAAPAVVEFGAGRGYLTQMLADCYGIQMVFLVERKSYKLKADRSLRQKDNLTL 273
            +     N  PAVVEFGAGRGYLTQMLADCYGI+ VFLVERKSYKLKADRSLRQK++L L
Sbjct: 182 DDNA---NCVPAVVEFGAGRGYLTQMLADCYGIKRVFLVERKSYKLKADRSLRQKESLIL 238

Query: 274 ERLRIDIEDLNLNAVESLLGLPFLAIGKHLCGPATDLTLRCCLPEQSSETTMEKCSVNHS 333
           ERLRIDIEDLNLNAVESL G+P+LAIGKHLCGPATDLTLRCC  +QSSE  M  CS N  
Sbjct: 239 ERLRIDIEDLNLNAVESLQGVPYLAIGKHLCGPATDLTLRCCFSKQSSEHNMGHCSDNDF 298

Query: 334 LKGLAIATCCHHLCQWKHYTS 354
           L+GLAIATCCHHLCQWKHY +
Sbjct: 299 LRGLAIATCCHHLCQWKHYIN 319