Jatropha Genome Database

JcCA0280911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280911.10 - phase: 0 
         (203 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m002000 DNA-directed RNA polymerase III 25 kD polypeptide,...   246   7e-66

>29883.m002000 DNA-directed RNA polymerase III 25 kD polypeptide,
           putative
          Length = 194

 Score =  246 bits (627), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 148/191 (77%), Gaps = 10/191 (5%)

Query: 1   MFYLSLVEHTXXXXXXXXXXXXDDAIKKELENIFLDKTMEVVFVMKVISNLGLCISIYDL 60
           MFYLS +EHT             DA+KKELE IFLDK         VI+NLGLCIS+YD+
Sbjct: 1   MFYLSEIEHTLRLPPSLLSLPLQDAVKKELEIIFLDK---------VIANLGLCISVYDV 51

Query: 61  RNIEGGFIFPGDGASTYTVKFRMVVFRPFVGETIVAKLKESKEDGLRLSLGFFDDIHIPA 120
            +I+GGFIFPGDGASTYTV+FR+VVFRPFVGE IVAKLKES  DGLRLSLGFFDDI+IP+
Sbjct: 52  THIDGGFIFPGDGASTYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPS 111

Query: 121 HRLPKPCHFVPNSEKRDEVTWIWDYPGNEDAV-FSIDGIDEIKFKVDSVKYPPVPLEQQE 179
           HRLPKP +   + E R +  WIW++   ++ + F+IDG+DEIKF+VDSVKYPPVPLEQQE
Sbjct: 112 HRLPKPSYSQQDPENRYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLEQQE 171

Query: 180 KPFAPMMITVS 190
           KPFAPM+IT S
Sbjct: 172 KPFAPMVITGS 182