Jatropha Genome Database

JcCA0280821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280821.20 - phase: 2 /partial
         (69 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m009048 pentatricopeptide repeat-containing protein, putative   100   1e-22
29883.m001962 pentatricopeptide repeat-containing protein, putative   100   1e-22
30169.m006555 pentatricopeptide repeat-containing protein, putative   100   2e-22
30131.m006909 pentatricopeptide repeat-containing protein, putative    97   1e-21
30174.m009054 pentatricopeptide repeat-containing protein, putative    96   3e-21
29726.m004020 pentatricopeptide repeat-containing protein, putative    94   1e-20
30074.m001416 pentatricopeptide repeat-containing protein, putative    93   3e-20
29869.m001155 pentatricopeptide repeat-containing protein, putative    75   8e-15

>30128.m009048 pentatricopeptide repeat-containing protein, putative
          Length = 716

 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 53/69 (76%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSERLA+A+GL++T +   IRI+KNLR+C DCH   K+ISKI  R+II+RD  RFH F +
Sbjct: 648 HSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQD 707

Query: 61  GTCSCKDYW 69
           G CSC DYW
Sbjct: 708 GICSCGDYW 716


>29883.m001962 pentatricopeptide repeat-containing protein, putative
          Length = 835

 Score =  100 bits (249), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 51/69 (73%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSERLAIAYGL+ T     IR+ KNLRVCGDCH    ++S+ ++RE+IVRD  RFH F +
Sbjct: 767 HSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKD 826

Query: 61  GTCSCKDYW 69
           G CSC D+W
Sbjct: 827 GMCSCGDFW 835


>30169.m006555 pentatricopeptide repeat-containing protein, putative
          Length = 660

 Score =  100 bits (249), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 51/69 (73%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSE+LA+A+ ++ TK    IR+ KNLRVCGDCH   K+ISKI +REII+RD  RFH F  
Sbjct: 592 HSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQE 651

Query: 61  GTCSCKDYW 69
           G CSC DYW
Sbjct: 652 GCCSCGDYW 660


>30131.m006909 pentatricopeptide repeat-containing protein, putative
          Length = 684

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 52/69 (75%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSERLA+A+G++ +    T+R+ KNLR+CGDCH   K+I+KI   +IIVRD +RFH F +
Sbjct: 616 HSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRD 675

Query: 61  GTCSCKDYW 69
           G C+C D+W
Sbjct: 676 GYCTCNDFW 684


>30174.m009054 pentatricopeptide repeat-containing protein, putative
          Length = 810

 Score = 96.3 bits (238), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 50/69 (72%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSE+LAI +GL+ T    T+RI KNLR+C DCH  +K +S++  REII+RD  RFH F +
Sbjct: 742 HSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKD 801

Query: 61  GTCSCKDYW 69
           G CSC DYW
Sbjct: 802 GLCSCGDYW 810


>29726.m004020 pentatricopeptide repeat-containing protein, putative
          Length = 406

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/69 (55%), Positives = 52/69 (75%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSERLA+A+ L+      T+R++KNLR+C DCHE  K+IS I +R+ +VRD  RFH F N
Sbjct: 338 HSERLALAFALLSIPKGITVRVMKNLRMCKDCHEAFKLISGIVERDFVVRDINRFHHFDN 397

Query: 61  GTCSCKDYW 69
           G+CSC+D+W
Sbjct: 398 GSCSCRDFW 406


>30074.m001416 pentatricopeptide repeat-containing protein, putative
          Length = 793

 Score = 92.8 bits (229), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HSE+LA+++G++     A ++++KNLRVC DCH   K+IS +  REII+RD +RFH F  
Sbjct: 725 HSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHHFKE 784

Query: 61  GTCSCKDYW 69
           G+CSC DYW
Sbjct: 785 GSCSCNDYW 793


>29869.m001155 pentatricopeptide repeat-containing protein, putative
          Length = 484

 Score = 74.7 bits (182), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 43/69 (62%)

Query: 1   HSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVN 60
           HS +LAI +GL+ T     + I K  R+C DCH V K IS +  REII+ D   FH F  
Sbjct: 416 HSVKLAICFGLISTAIGKPVVIRKTTRICEDCHMVAKKISLVTKREIIIGDSKIFHHFNG 475

Query: 61  GTCSCKDYW 69
           G+CSC+DYW
Sbjct: 476 GSCSCRDYW 484