Jatropha Genome Database

JcCA0280621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0280621.10 + phase: 0 /pseudo/partial
         (238 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013950 conserved hypothetical protein                          162   1e-40

>30147.m013950 conserved hypothetical protein
          Length = 535

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 83/89 (93%)

Query: 122 KVKEMKSMSMAIHKLEGQANNLGRTSLADQEDYTLSVANHPKQTYVNGKADSDLRSVRSS 181
           +V+EMKSMS AIHKLEGQ NNLGRTSL +QEDYTLSV NHPKQTYVNGK +SD R+VRSS
Sbjct: 256 QVQEMKSMSTAIHKLEGQNNNLGRTSLVNQEDYTLSVGNHPKQTYVNGKVESDSRAVRSS 315

Query: 182 SPPTSAEPSVAPHPKSYMEIMAMVQRGER 210
           SPPT+AEP+VAPHPKSYMEIMAMVQRGER
Sbjct: 316 SPPTAAEPTVAPHPKSYMEIMAMVQRGER 344