Jatropha Genome Database
- JcCA0279321.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0279321.10 - phase: 0 /partial
(157 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29593.m000174 conserved hypothetical protein 206 3e-54
30128.m009030 nucleic acid binding protein, putative 100 3e-22
29726.m004014 nucleic acid binding protein, putative 99 1e-21
29620.m000559 zinc finger protein, putative 94 3e-20
29647.m002009 nucleic acid binding protein, putative 94 3e-20
30147.m013813 nucleic acid binding protein, putative 81 2e-16
>29593.m000174 conserved hypothetical protein
Length = 500
Score = 206 bits (525), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/140 (71%), Positives = 107/140 (76%), Gaps = 2/140 (1%)
Query: 17 VPLIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPE 76
VPL A E LPERP EPDCPYFLKT+RCKYG CKFNHPKD+LAL G S+ ND FALPE
Sbjct: 170 VPLAATTEPLPERPGEPDCPYFLKTQRCKYGSKCKFNHPKDELAL--GSSQSNDVFALPE 227
Query: 77 RPSEPTCAFYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQIGSTVTMEGTTGDFNVV 136
RPSEP CAFY KTG+CKFGATCKFHHPKDIQ+ GQE N +Q + GTTGD N V
Sbjct: 228 RPSEPICAFYAKTGRCKFGATCKFHHPKDIQIALGQENCNIMQNEAAAMTHGTTGDVNAV 287
Query: 137 KASISLTPALGHNSKGLPIR 156
KA IS AL HNSKGLPIR
Sbjct: 288 KACISFNQALLHNSKGLPIR 307
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 54/123 (43%), Gaps = 36/123 (29%)
Query: 19 LIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKL------------------- 59
L+ + LP RP E DCP++LKT CKYG C++NHP
Sbjct: 297 LLHNSKGLPIRPGEVDCPFYLKTGSCKYGATCRYNHPDRNAINPPAAAIGHPLLASPAAN 356
Query: 60 --------------ALFQGGSEDNDGFA---LPERPSEPTCAFYMKTGKCKFGATCKFHH 102
A++ S G P+RP C +YMKTG+CKFG C+FHH
Sbjct: 357 LNLGDINPAASIYQAIYPSFSSPMLGVGPTIYPQRPGHAECDYYMKTGECKFGERCRFHH 416
Query: 103 PKD 105
P D
Sbjct: 417 PID 419
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 27 PERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDG----FALPERPSEPT 82
P+RP +C Y++KT CK+G C+F+HP D+ A ++ LP R
Sbjct: 389 PQRPGHAECDYYMKTGECKFGERCRFHHPIDRSAPTATQAQQQAVKLTLAGLPRREGAVH 448
Query: 83 CAFYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQIGSTVTMEG 128
C +YMKTG CK+GATCKF HP ++ + G EG
Sbjct: 449 CPYYMKTGTCKYGATCKFDHPPPGEVMAIASQGTSTSAGDVEGAEG 494
>30128.m009030 nucleic acid binding protein, putative
Length = 448
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 26 LPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEPTCAF 85
PER +P+C Y+LKT CK+G CKF+HPKDK + G + P RP+E CA+
Sbjct: 99 FPERIGQPECQYYLKTGTCKFGATCKFHHPKDKAGI--AGRVSLNILGYPLRPNEIECAY 156
Query: 86 YMKTGKCKFGATCKFHHPKDIQMQF---GQETNNTVQIGSTVTMEGTTGDF-NVVKASIS 141
Y++TG+CKFG+TCKFHHP+ + G TVQ +T + TG N +AS
Sbjct: 157 YLRTGQCKFGSTCKFHHPQPTNVMVPLRGSPVYPTVQSPTTPGQQSYTGGVTNWSRASFI 216
Query: 142 LTPALGHNSKGLPIRL 157
+P S P+ L
Sbjct: 217 TSPRWQAPSSYTPLIL 232
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 27 PERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEPTCAFY 86
PE P EPDC Y+++T C++G C+FNHP ++ + PER +P C +Y
Sbjct: 55 PEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGE---FPERIGQPECQYY 111
Query: 87 MKTGKCKFGATCKFHHPKD 105
+KTG CKFGATCKFHHPKD
Sbjct: 112 LKTGTCKFGATCKFHHPKD 130
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 26 LPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEPTCAF 85
PERP +P+C +++KT CK+G C+F+HP+++L G LP RP EP C F
Sbjct: 305 FPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIG--LPLRPGEPLCIF 362
Query: 86 YMKTGKCKFGATCKFHHPKDI 106
Y + G CKFG +CKF HP I
Sbjct: 363 YSRYGVCKFGPSCKFDHPMGI 383
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 66 SEDNDGFALPERPSEPTCAFYMKTGKCKFGATCKFHHPKDIQM 108
SE D PE P EP C++Y++TG C+FGATC+F+HP + ++
Sbjct: 46 SETMDSGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKL 88
>29726.m004014 nucleic acid binding protein, putative
Length = 481
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 8/103 (7%)
Query: 3 MIIDKDSSLLLAVVVPLIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALF 62
++ + D L L V P PERP E DC Y+L+T C YG C+FNHP+D+ A+
Sbjct: 27 VLEEGDWQLGLGEVEP------GYPERPEEADCIYYLRTGFCGYGSRCRFNHPRDRGAVL 80
Query: 63 QGGSEDNDGFALPERPSEPTCAFYMKTGKCKFGATCKFHHPKD 105
G+ PER +P C +YM+TG CKFGA+CK+HHPK
Sbjct: 81 --GAARAGAAEFPERVGQPVCQYYMRTGTCKFGASCKYHHPKQ 121
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Query: 14 AVVVPLIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDN---- 69
AV+ A PER +P C Y+++T CK+G +CK++HPK QGG N
Sbjct: 78 AVLGAARAGAAEFPERVGQPVCQYYMRTGTCKFGASCKYHHPK------QGGGSANPVSL 131
Query: 70 DGFALPERPSEPTCAFYMKTGKCKFGATCKFHHPKDIQMQF 110
+ + P RP E C +Y+KTG+CKFG TCKFHHP+ +Q
Sbjct: 132 NYYGYPLRPGEKECTYYVKTGQCKFGVTCKFHHPQPANLQI 172
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 8/85 (9%)
Query: 22 EMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDN---DGFALPERP 78
E S PERP +P+C Y++KT CK+G +CK++HP + +A + N LP RP
Sbjct: 293 EQPSFPERPGQPECQYYMKTGDCKFGSSCKYHHPPELIA-----PKTNVVLSPMGLPLRP 347
Query: 79 SEPTCAFYMKTGKCKFGATCKFHHP 103
P C Y + G+CKFG CKF HP
Sbjct: 348 GAPHCTHYTQRGQCKFGPACKFDHP 372
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 66 SEDNDGFALPERPSEPTCAFYMKTGKCKFGATCKFHHPKDI 106
S + + PERP +P C +YMKTG CKFG++CK+HHP ++
Sbjct: 289 SNQKEQPSFPERPGQPECQYYMKTGDCKFGSSCKYHHPPEL 329
>29620.m000559 zinc finger protein, putative
Length = 456
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 20 IAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPS 79
+A P+RP EPDC Y+L+T C YG NC+FNHP Q E LPER
Sbjct: 45 MAPSSPYPDRPGEPDCVYYLRTGLCGYGNNCRFNHPPYAAQGNQFKEE------LPERVG 98
Query: 80 EPTCAFYMKTGKCKFGATCKFHHPKD 105
+P C +Y+KTG CK+G+TCK+HHP+D
Sbjct: 99 QPDCGYYLKTGTCKYGSTCKYHHPRD 124
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 24 ESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEPTC 83
E LPER +PDC Y+LKT CKYG CK++HP+D+ G + LP R E +C
Sbjct: 91 EELPERVGQPDCGYYLKTGTCKYGSTCKYHHPRDRNG---AGPVSFNIVGLPMRQDEKSC 147
Query: 84 AFYMKTGKCKFGATCKFHHPKDIQMQFG 111
+YM+TG CKFG CKFHHP+ + G
Sbjct: 148 PYYMRTGSCKFGVACKFHHPQPAPLGTG 175
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 19 LIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERP 78
L +LPERP +P+C YF+ T CKYG +CK++HPK+++A S G LP RP
Sbjct: 281 LSTTSSNLPERPDQPECRYFMNTGTCKYGSDCKYHHPKERIAQLATNSIGPVG--LPSRP 338
Query: 79 SEPTCAFYMKTGKCKFGATCKFHHP 103
+P C+ Y G CKFG TC+F HP
Sbjct: 339 GQPICSNYSMYGLCKFGPTCRFDHP 363
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 74 LPERPSEPTCAFYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQIG 121
LPERP +P C ++M TG CK+G+ CK+HHPK+ Q TN+ +G
Sbjct: 288 LPERPDQPECRYFMNTGTCKYGSDCKYHHPKERIAQLA--TNSIGPVG 333
>29647.m002009 nucleic acid binding protein, putative
Length = 478
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 24 ESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEPTC 83
ES PERP PDC Y+++T C YG C++NHP+++ A+ + PER EP+C
Sbjct: 46 ESYPERPGVPDCVYYMRTGFCGYGNRCRYNHPRNRAAVEAAVRATGE---YPERIGEPSC 102
Query: 84 AFYMKTGKCKFGATCKFHHPK 104
FY+KTG CKFGA+CKFHHPK
Sbjct: 103 EFYLKTGTCKFGASCKFHHPK 123
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 27 PERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEPTCAFY 86
PER EP C ++LKT CK+G +CKF+HPK + G+ L RP E C++Y
Sbjct: 94 PERIGEPSCEFYLKTGTCKFGASCKFHHPKHGGGSLSHVPLNTHGYPL--RPGENECSYY 151
Query: 87 MKTGKCKFGATCKFHHPK 104
+KTG+CKFG TCKFHHP+
Sbjct: 152 LKTGQCKFGITCKFHHPQ 169
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 9/100 (9%)
Query: 24 ESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDN---DGFALPERPSE 80
++ PERP EP+C Y+L+T CK+G +C+++HP+D++ N LP RP
Sbjct: 297 QTFPERPGEPECQYYLRTGDCKFGSSCRYHHPRDRVV-----PRTNCVLSPLGLPLRPGA 351
Query: 81 PTCAFYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQI 120
C FY++ G CKFG+TCKF HP + M++ ++ + +
Sbjct: 352 QHCTFYLRNGHCKFGSTCKFDHPMET-MRYSPSASSLIDM 390
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 64 GGSEDNDGFALPERPSEPTCAFYMKTGKCKFGATCKFHHPKD 105
G + G + PERP P C +YM+TG C +G C+++HP++
Sbjct: 38 GLNNSGGGESYPERPGVPDCVYYMRTGFCGYGNRCRYNHPRN 79
>30147.m013813 nucleic acid binding protein, putative
Length = 495
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 13 LAVVVPLIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSE----- 67
+ V + E E +RP + +C Y+L+T CKYG C++NH + K L Q +
Sbjct: 175 MQVSKEKVKEREEATDRPGQTECKYYLRTGGCKYGKACRYNHSRAKPLLLQAKTAVFPAL 234
Query: 68 DNDGFALPERPSEPTCAFYMKTGKCKFGATCKFHHP 103
D + LP RP E C +YM+ G CK+GA C+F+HP
Sbjct: 235 DLNFLGLPIRPGERECPYYMRNGSCKYGANCRFNHP 270
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 22 EMESLPERPREPDCPYFLKTKRCKYGLNCKFNHPKDKLALFQGGSEDNDGFALPERPSEP 81
++E PERP +P+C YF+KT CK+ NCK++HPK+ ++ + G LP RP +
Sbjct: 372 QVEEFPERPGQPECSYFMKTGDCKFKSNCKYHHPKNHISKSPPCVLSDKG--LPLRPGQN 429
Query: 82 TCAFYMKTGKCKFGATCKFHHP 103
C++Y + G CKFG CKF HP
Sbjct: 430 ICSYYSRYGICKFGPACKFDHP 451
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 29/132 (21%)
Query: 26 LPERPREPDCPYFLKTKRCKYGLNCKFNHP-KDKLALFQGGSEDNDGFALPERPSEPTCA 84
P RP DC Y++KT CK+G NCKFNHP K K+ + + ++ + +RP + C
Sbjct: 141 YPVRPEAEDCSYYMKTGTCKFGSNCKFNHPVKRKMQVSKEKVKERE--EATDRPGQTECK 198
Query: 85 FYMKTGKCKFGATCKFHHPKDIQMQFGQETNNTVQIGSTVTMEGTTGDFNVVKASISLTP 144
+Y++TG CK+G C+++H + + +++A ++ P
Sbjct: 199 YYLRTGGCKYGKACRYNHSRAKPL--------------------------LLQAKTAVFP 232
Query: 145 ALGHNSKGLPIR 156
AL N GLPIR
Sbjct: 233 ALDLNFLGLPIR 244
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 74 LPERPSEPTCAFYMKTGKCKFGATCKFHHPKD 105
PERP +P C+++MKTG CKF + CK+HHPK+
Sbjct: 376 FPERPGQPECSYFMKTGDCKFKSNCKYHHPKN 407
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 14 AVVVPLIAEMESLPERPREPDCPYFLKTKRCKYGLNCKFNHP-------KDKLALFQGGS 66
AV L LP RP E +CPY+++ CKYG NC+FNHP D LA GGS
Sbjct: 229 AVFPALDLNFLGLPIRPGERECPYYMRNGSCKYGANCRFNHPDPTTVGGSDPLAFSNGGS 288