Jatropha Genome Database

JcCA0279201.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279201.10 - phase: 0 /partial
         (235 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008849 beta-tubulin cofactor d, putative                       399   e-112

>30174.m008849 beta-tubulin cofactor d, putative
          Length = 1260

 Score =  399 bits (1025), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/236 (82%), Positives = 216/236 (91%), Gaps = 1/236 (0%)

Query: 1   MAVEEEDDEHGCKERVLQKYFLQEWKLVKSLLDDIVSNGRVSDLSSVHKIRSIMDKYQQE 60
           + VEEEDDEHG KERVLQKYFLQEWKLVKSLLDDIV NGRV+D SSV+KIRSI+DKYQQE
Sbjct: 10  LEVEEEDDEHGSKERVLQKYFLQEWKLVKSLLDDIVLNGRVTDSSSVNKIRSILDKYQQE 69

Query: 61  GQLLEPYLESIVSPLMSIIRTKTIELGIASDEILQVIKPICIIIYCLVTVGGYKAVIKFF 120
           GQLLEPYLE+IV+PLMSI+RTKTI+LG+A++EIL+VIKPICIIIYCLVTV GYK+VIKFF
Sbjct: 70  GQLLEPYLETIVTPLMSIVRTKTIDLGVATNEILEVIKPICIIIYCLVTVCGYKSVIKFF 129

Query: 121 PHQVSNLELAVALLDKCHDTASGTSLRQESTGEMEAKCXXXXXXXXXXXXPFDISSVDTS 180
           PHQVS+LELAV+LL+KCHDTAS TSLRQESTGEMEAKC            PFDISSVDTS
Sbjct: 130 PHQVSDLELAVSLLEKCHDTASATSLRQESTGEMEAKCVILLWLSILVLVPFDISSVDTS 189

Query: 181 IAN-NNDICKLEPSPLVLRIMKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPMAFT 235
           IAN +ND+ KLEP+PLVLR++KFSKDYLSNAGPMRTMAGLLLSKLLTRPDMP+AFT
Sbjct: 190 IANSSNDLGKLEPAPLVLRMLKFSKDYLSNAGPMRTMAGLLLSKLLTRPDMPLAFT 245