Jatropha Genome Database

JcCA0279081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0279081.10 - phase: 0 
         (299 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29625.m000723 conserved hypothetical protein                          301   2e-82

>29625.m000723 conserved hypothetical protein
          Length = 291

 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/305 (59%), Positives = 201/305 (65%), Gaps = 20/305 (6%)

Query: 1   MPQVDLETLVSACAGVSCDRKIACETLATTTTAS---DNHNQQPQDSETXXXXXXXXXXX 57
           MPQVDLETLVSACAGVSCD KIACETLA TTT +    NHN    D ET           
Sbjct: 1   MPQVDLETLVSACAGVSCDNKIACETLAATTTITIIESNHNNVNND-ETDPPEIPPDFPP 59

Query: 58  XSFWLSKDAEYDWFDRNAFIERKDSTKGNNSHSANLNPNIIPHSGIQSNSQRFSNLKSKA 117
            SFWLSKDAE+DWFDRNAFIERKDSTKGN SHS NLNPN        SNSQRFSNLKSK 
Sbjct: 60  ESFWLSKDAEHDWFDRNAFIERKDSTKGN-SHSTNLNPN----INPNSNSQRFSNLKSKP 114

Query: 118 SILGLPKPQKSCFVEARRYCKPGKTRLFPKRXXXXXXXXXXLIEPSSPKVSCMXXXXXXX 177
           SI+GLPKPQKSCFV+ARR+CKP  TRLFPKR          LIEPSSPKVSCM       
Sbjct: 115 SIIGLPKPQKSCFVDARRHCKPANTRLFPKRSGSVSKSDSSLIEPSSPKVSCMGRVRSKK 174

Query: 178 XXXXXXXXXXXXXXXXETDNKREKVERKQRTGFFSTFRAIFRVTKHNTRNRKDGSLSRQG 237
                           ET  KRE+ ERKQR+GFF++FRAIFR TK    + + G  + Q 
Sbjct: 175 DRNRRLKNQQQSGRSNETGGKRERPERKQRSGFFASFRAIFRATKKGKDSSQKGKDASQE 234

Query: 238 STAKTTI--TDIRDRLPAGERDSQPRKSVDSDGFEPA-AGTEPVGLGAMKRFASGRKSDS 294
           S+ KTT+  +DIRDRLP  ER + P         EPA  G EPVGLG MKRFASGRKS+S
Sbjct: 235 SSKKTTVKTSDIRDRLPMRERGASP--------IEPATGGIEPVGLGGMKRFASGRKSES 286

Query: 295 WVDVA 299
           W++VA
Sbjct: 287 WIEVA 291