Jatropha Genome Database

JcCA0278741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278741.10 - phase: 0 /pseudo
         (313 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29904.m002893 ubiquitin-protein ligase, putative                       58   5e-09
29806.m000946 conserved hypothetical protein                           57   9e-09
28152.m000886 conserved hypothetical protein                           54   7e-08
29751.m001829 ubiquitin-protein ligase, putative                       52   5e-07
29844.m003355 hypothetical protein                                     50   1e-06
29630.m000832 ubiquitin-protein ligase, putative                       49   2e-06
30026.m001472 conserved hypothetical protein                           49   4e-06
30027.m000838 ubiquitin-protein ligase, putative                       49   4e-06
29907.m000633 hypothetical protein                                     48   5e-06
29904.m002894 ubiquitin-protein ligase, putative                       47   8e-06

>29904.m002893 ubiquitin-protein ligase, putative
          Length = 406

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 5   SKKENPDKEIA---DDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRIN 61
           S +  PD  I+   +DLIV+IL ++P+K + RF+  SK W S+ISD RFA+  +   + N
Sbjct: 41  SAQAEPDTSISTLPEDLIVEILSRVPVKPLLRFKCVSKSWNSIISDPRFAKLQLKRAKEN 100

Query: 62  AP-HQNSLIFRHLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSCCCDG 120
           +    N L+   L+  +  SL+     +D   +  +N         P    + +   CDG
Sbjct: 101 SNISCNRLL---LSTWSPRSLDFEAFCDDDLSNTITNVSFPAIVKGPPTFYVRILGSCDG 157

Query: 121 ILCATISIMRILLWTPLVEDYKI*RVP---VLRLILSCTMY 158
           ++C       + LW P    YK    P   V R+ L    Y
Sbjct: 158 LVCLLDDYGTMFLWNPTTRQYKELPKPKGAVYRMFLHGIGY 198


>29806.m000946 conserved hypothetical protein
          Length = 371

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 71/138 (51%), Gaps = 21/138 (15%)

Query: 12  KEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNH-----NRINAPHQN 66
           + I  +++++IL +LP+KS+ ++R   + W S+I++  F  +H+NH     NR+++    
Sbjct: 3   ENIPQEILIEILKRLPVKSLLKYRCVCQSWHSLITNSSFISTHINHSIECNNRVHS---- 58

Query: 67  SLIFRHLTMLNSESLEKVVKQNDKTVDVDSND--LRIYK---FSIPSKDRLNVSCCCDGI 121
                   ++  +S+    ++    +D DS D   R+Y+   F    +  L +   C+G+
Sbjct: 59  ------YALVKQKSVPDCKERFILYIDDDSGDEPFRVYQELDFPFKGERYLEIISSCNGL 112

Query: 122 LCATIS-IMRILLWTPLV 138
           +C + S   R  LW P++
Sbjct: 113 VCLSDSQYARFYLWNPVI 130


>28152.m000886 conserved hypothetical protein
          Length = 379

 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 18/133 (13%)

Query: 13  EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRH 72
            I  ++++ I L+LP+K + R R   K W S+IS+  F  +H  +  I++ + N LI RH
Sbjct: 4   HIPKEVLIKIFLRLPVKQLLRCRCICKTWYSLISNHNFISTHSRYT-IDSNNNNYLILRH 62

Query: 73  LTMLNSESLEKVVKQNDKTVDVDSNDL--RIYKFSIP---SKDRLNVSCCCDGILCATIS 127
            +  N        K+    +  D +D+     +   P   S D   +   C+GI+C T +
Sbjct: 63  YSRSN--------KKERFALHFDDDDMFSEYQELDFPLESSWDYFEIVGSCNGIICLTDN 114

Query: 128 ----IMRILLWTP 136
               + RI+LW P
Sbjct: 115 HSHILKRIVLWNP 127


>29751.m001829 ubiquitin-protein ligase, putative
          Length = 358

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 12/130 (9%)

Query: 17  DLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRHLTML 76
           D+I D+LL+LP+K++ RFR  SK + ++I +  F ++H++ +    P +  ++ RH +  
Sbjct: 7   DIIFDVLLRLPVKTLLRFRCISKSYCTLIDNPDFIKAHLDTSIQTKPRKKLILLRHQS-- 64

Query: 77  NSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLN---VSCCCDGILCATISIMRILL 133
           N  +       N   +D         K   P K + N   +   C+ ++    +  ++LL
Sbjct: 65  NGVAEFYAADHNGGLIDP-------IKLKSPIKSKSNGTRIVGSCNSLVLLMQNTDKLLL 117

Query: 134 WTPLVEDYKI 143
           W P    YKI
Sbjct: 118 WNPFTTQYKI 127


>29844.m003355 hypothetical protein
          Length = 421

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 53/289 (18%)

Query: 1   MAMISKKENPDKEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFAR----SHVN 56
           MAM++      K + DD++ DIL +LP+KS+ RFR  SK W + ++  RF       H++
Sbjct: 1   MAMMTVAS---KHLPDDIVTDILTRLPLKSLVRFRCVSKPWLNFLTHSRFPYWLLFRHLH 57

Query: 57  HNRI-NAPHQNS--LIFRHLTMLNSESLEKVVKQNDKTVDVDSNDLRI---------YKF 104
            + + + PH  S   +F + +  +  S  + V+ +D++ D D   L           +KF
Sbjct: 58  CDTLKDCPHNESSIFLFYNKSSNSRPSRRREVQASDQSRD-DQCKLYALGGGFLENSFKF 116

Query: 105 S-------IPSKDRLNVSCCCDGILC------------ATISIMRILLWTPLVEDYKI*R 145
           +       I  K     +  C G+ C            A  +   ++LW P + DYKI  
Sbjct: 117 AFEIDFPLIRGKSFEIKTGSCHGMFCLSMDGDHNYGDDANSNSNTLVLWNPSIHDYKI-- 174

Query: 146 VPVLRLILSCTMY*VLGMIRLLMITKLCMFHPLQLILEDVRRLVF*L*GPTRGDKFMMTS 205
           +P+ + +  C     LG    +   K+      Q+ +  V+R ++      R       S
Sbjct: 175 LPLPQELGVCAGVCGLGFDSSMEDYKVVSVCDKQVHVFSVKRNLW------RNLGGFDYS 228

Query: 206 NFLRMIPQKQFL*MEVCTGLLFDSTDSRRNTIIGFNLATEVFWEVLLPP 254
            F   IP      +  C            + I+ FNL+ E F EV  PP
Sbjct: 229 VFYEAIP------LNGCLYWGASKFHKFADRILCFNLSDETFREVPSPP 271


>29630.m000832 ubiquitin-protein ligase, putative
          Length = 414

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 19/151 (12%)

Query: 17  DLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFR----- 71
           +L+ +IL +LP+  + RFRS SK W + I D  F ++H+  +R    +  +LIF      
Sbjct: 8   ELLTEILTRLPVDCLLRFRSISKSWCAKIDDPNFIKTHLKKSRETNSNL-TLIFAGSHPD 66

Query: 72  HLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSCCCDGILCATISIMRI 131
           +   +N +SL  ++K  +             K    +   + +   C+G+LC   +  RI
Sbjct: 67  YFYNVNLDSLNSIIKLENPI-----------KGPTDASHNIKIVGSCNGLLCFGNASGRI 115

Query: 132 LLWTPLVEDYKI*RVPVLRLILSCTMY*VLG 162
            L  P    +K+  +P LR+  S     V G
Sbjct: 116 TLMNPSTRKHKV--LPFLRMDASVKGKSVWG 144


>30026.m001472 conserved hypothetical protein
          Length = 379

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 21/154 (13%)

Query: 5   SKKENPDKE-IADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAP 63
           +K+E   +  I  D+I+ ILL+LP+KS+ RF++    W S+IS   F+  H++H R    
Sbjct: 14  TKREAAGRPYIPHDIILSILLRLPVKSIIRFKAVHSSWLSLISSPEFSFRHLHHERA-CF 72

Query: 64  HQNSLI---FRH-----LTMLNS-ESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNV 114
           H++ +I    RH     L++ +S ++  + V ++   VD+ +    +Y     +  R  V
Sbjct: 73  HKHGVIQIRNRHTAYPCLSLRSSFDTAAEDVDRDHDLVDIQNPFGEVYH---STYIRAEV 129

Query: 115 SCCCDGILCATISIMR------ILLWTPLVEDYK 142
              C+G+L   + I R       LLW P   +++
Sbjct: 130 LGSCNGLLLVCL-IHRDRRSREFLLWNPSTREHE 162


>30027.m000838 ubiquitin-protein ligase, putative
          Length = 351

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 24/139 (17%)

Query: 17  DLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRHLT-- 74
           +L+V+IL KLP+KS+ RF+S SK   S+I+D  F + H    R+      S  F+ +T  
Sbjct: 6   ELVVEILAKLPVKSLMRFKSVSKSLHSIITDSEFVKLHSGPGRLLLVTSASK-FQSITCE 64

Query: 75  -MLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSCCCDGILCATI------- 126
            +  + S   +++  D   D    DL  Y           V   C+G++C  I       
Sbjct: 65  VLWGNSSGNHIIQNLDHPWD---GDLEYYH-------DFYVHGSCNGLICLDIHERLNFY 114

Query: 127 ---SIMRILLWTPLVEDYK 142
              +   + LW P   D+K
Sbjct: 115 GLCNRRDLYLWNPTTNDFK 133


>29907.m000633 hypothetical protein
          Length = 147

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 13 EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHV----NHNRI 60
           + +D+ +DILL+LP+K + RF+  SK W S+ISD  F +SH+    NH + 
Sbjct: 3  HVPEDIAIDILLRLPVKPLLRFKCVSKTWYSLISDPCFIKSHLQLSNNHKKF 54


>29904.m002894 ubiquitin-protein ligase, putative
          Length = 257

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)

Query: 13  EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRH 72
           ++  DLI +IL ++P+K + RF+   K W S+IS+  FA+  +   +     +N+ +  H
Sbjct: 3   KLPQDLITEILSRVPVKPLIRFKCICKTWNSLISNPEFAKLQLKRAK-----ENNNVSNH 57

Query: 73  LTMLNS----ESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKD-----RLNVSCCCDGILC 123
             +L +    +SL+     ND      SN LR   +   +KD      + +   CDG++ 
Sbjct: 58  YRLLLATWPPQSLDYEAYCNDDI----SNALRKLSYHAIAKDPNDNYDVRILGSCDGLVY 113

Query: 124 ATISIM-RILLWTPLVEDYK 142
                   + LW P + DYK
Sbjct: 114 LYNEYHDSMFLWNPTIGDYK 133