Jatropha Genome Database

JcCA0278721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278721.10 + phase: 1 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001337 undecaprenyl pyrophosphate synthetase, putative         155   4e-39
34670.m000028 undecaprenyl pyrophosphate synthetase, putative          77   2e-15
28565.m000328 undecaprenyl diphosphate synthase, putative              60   3e-10
28565.m000330 undecaprenyl diphosphate synthase, putative              57   1e-09
29830.m001441 undecaprenyl diphosphate synthase, putative              55   5e-09
28565.m000331 undecaprenyl diphosphate synthase, putative              54   1e-08

>29681.m001337 undecaprenyl pyrophosphate synthetase, putative
          Length = 310

 Score =  155 bits (392), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 79/83 (95%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
           C++IA RVK+G IEPEDI+E LIEQELETNCSE PSPDLLIRTSGELRISNFLLWQLAYT
Sbjct: 216 CRNIAGRVKEGAIEPEDISEDLIEQELETNCSEHPSPDLLIRTSGELRISNFLLWQLAYT 275

Query: 61  ELFFAEELWPDFGKEGFVEALTS 83
           EL+FAEELWPDFGK+GFVEALTS
Sbjct: 276 ELYFAEELWPDFGKDGFVEALTS 298


>34670.m000028 undecaprenyl pyrophosphate synthetase, putative
          Length = 165

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 1   CKSIAARVKDGLIEPEDITESLIEQELETNCSEFPSPDLLIRTSGELRISNFLLWQLAYT 60
             S+A  V +G ++   IT   I   L+T  +  P PDL+IRTSGE R+SNFLLWQ AY+
Sbjct: 65  AASLARDVAEGRLDASAITPDAISARLDT--AGIPDPDLIIRTSGEERLSNFLLWQAAYS 122

Query: 61  ELFFAEELWPDFGKEGFVEAL 81
           E  F  + WPDF ++  V A+
Sbjct: 123 EFLFIPDYWPDFNRQTLVAAI 143


>28565.m000328 undecaprenyl diphosphate synthase, putative
          Length = 331

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query: 35  PSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPDFGKEGFVEAL 81
           P PD+LIRTSGE R+SNFLLWQ +   L+  + LWP+FG    V A+
Sbjct: 268 PDPDILIRTSGETRLSNFLLWQASNCPLYSPDVLWPEFGLRHLVWAV 314


>28565.m000330 undecaprenyl diphosphate synthase, putative
          Length = 370

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 32/47 (68%)

Query: 35  PSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPDFGKEGFVEAL 81
           P PD+LIRT+GE R+SNFLLWQ     L+  + LWP+FG    V A+
Sbjct: 307 PDPDILIRTAGETRLSNFLLWQAGDCPLYSPDVLWPEFGLRHLVWAV 353


>29830.m001441 undecaprenyl diphosphate synthase, putative
          Length = 381

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query: 35  PSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPDFGKEGFV 78
           P PD+LIR+SGE R+SNFLLWQ +   L+  + LWP+ G +  V
Sbjct: 294 PEPDILIRSSGETRLSNFLLWQASDCMLYSPDALWPEIGFQHLV 337


>28565.m000331 undecaprenyl diphosphate synthase, putative
          Length = 363

 Score = 53.9 bits (128), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query: 35  PSPDLLIRTSGELRISNFLLWQLAYTELFFAEELWPD 71
           P PD+LIRTSGE R+SNFLLWQ    + +  + LWPD
Sbjct: 300 PDPDILIRTSGETRLSNFLLWQAGDCQGYSPDALWPD 336