Jatropha Genome Database

JcCA0278551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278551.10 + phase: 2 /pseudo/partial
         (422 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005465 catalytic, putative                                      82   3e-16

>29912.m005465 catalytic, putative
          Length = 676

 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 68/138 (49%), Gaps = 19/138 (13%)

Query: 1   NEPVQDTSSFPILQSSTKSVMVRNALXXXXXXXXXXXXXXXXXXXXAVXXXXXXXXXXXX 60
           ++P+ D SSFPI+QSSTKSVMVRN L                    ++            
Sbjct: 51  SDPIYDKSSFPIIQSSTKSVMVRNPLTVDTSSLSKD----------SMLVKDAGLVGGSG 100

Query: 61  XLKRNSGDTEXXXXXXXXXXXXHFELAVANDGDTDGFVSEKEDLENPIELVVDRNIDDGF 120
            LKRN  DT               ELAV    D DGFVS++EDL+N IE VVDRN+DD F
Sbjct: 101 DLKRNREDTVNGFVSDDEELDNPIELAV----DNDGFVSDEEDLDNTIEFVVDRNVDDDF 156

Query: 121 PFEDVVDKNGTFILESIR 138
           P     D NGT  L+ I+
Sbjct: 157 P-----DSNGTSTLQIIK 169