Jatropha Genome Database

JcCA0278051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278051.10 - phase: 0 /pseudo/partial
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001750 pentatricopeptide repeat-containing protein, putative   107   2e-24

>29680.m001750 pentatricopeptide repeat-containing protein, putative
          Length = 451

 Score =  107 bits (266), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 18  GMCRTGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRAGRYVEAGD 65
           GMCR GQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGR G+YVEA +
Sbjct: 358 GMCRRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKYVEAAN 405