Jatropha Genome Database

JcCA0277981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277981.20 + phase: 0 /partial
         (192 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014251 conserved hypothetical protein                          107   3e-24

>30170.m014251 conserved hypothetical protein
          Length = 742

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 84/143 (58%), Gaps = 7/143 (4%)

Query: 1   MEEDDMDSLFEGMVLFTPSQLVXXXXXXXXXXXXXXXXXNNDSAEISLPPRESESRLDAA 60
           ME DD+DSLFEGMVLFTPSQL                     +A  S    ESE+    A
Sbjct: 1   MEVDDLDSLFEGMVLFTPSQLDDDELQKQQQQQDDVRAS---AASTSDSFNESEAETPPA 57

Query: 61  TATIKTDPPSQHK-VQEPLDENLFSDLTLQTLTTESDSLPTAATLQTATNSRQISRKKKK 119
                T   S++K  QEPLDENLFSDLTLQTL+++S  +P   +    T SR ++RKKK+
Sbjct: 58  CINENTLITSENKPQQEPLDENLFSDLTLQTLSSQSHPIPDTTS---PTTSRHVTRKKKR 114

Query: 120 AASLRIGYGRGGSSIDDLPASPS 142
           AASLRIGY R  SS+DD P  PS
Sbjct: 115 AASLRIGYARDSSSLDDPPYYPS 137