Jatropha Genome Database

JcCA0277831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277831.10 - phase: 0 /partial
         (303 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30731.m000016 ribitol kinase, putative                                 54   8e-08

>30731.m000016 ribitol kinase, putative
          Length = 189

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 17/182 (9%)

Query: 16  LGVDVGTGSARAGLFN-ENGKLLGTASSPIQIWKE-------RDCVEQSSTDIWHAICAA 67
           +GVD G+ S R+ + N  NG+ + ++      W++        +   Q   D    +   
Sbjct: 8   IGVDYGSDSVRSVIVNARNGQEVASSVCYYPRWQKGLFCNAAANQFRQHPLDYIEGLEIT 67

Query: 68  VKSACNLA--DVSGEEVTGIGFAATCSL-VAVDSDGAPVSVSWSGDSRRN--IIVWMDHR 122
           +K    +A  +   + + G+    T S  VAVD  G P+++    ++  N   ++W DH 
Sbjct: 68  IKDCIRIAGGEAVAKNIKGLSVDTTGSTPVAVDRTGTPLALKAGFENNPNAMFVLWKDHT 127

Query: 123 AVKQAEKINSSNSPV----LQYCGGALSPEMQPPKLLWVKENLQESWSMVFRWMDLSDWL 178
           ++K+A +IN   +      L+Y GG  S E    KLL V    +E  +  + W++  DW+
Sbjct: 128 SLKEAAEINEHATRFDINYLKYVGGIYSSEWFWAKLLHVLRTDEEVKTACYSWVEHCDWI 187

Query: 179 SY 180
            +
Sbjct: 188 PF 189