Jatropha Genome Database

JcCA0277701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277701.10 - phase: 0 /pseudo/partial
         (465 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28153.m000280 conserved hypothetical protein                          307   7e-84

>28153.m000280 conserved hypothetical protein
          Length = 600

 Score =  307 bits (786), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 200/419 (47%), Positives = 242/419 (57%), Gaps = 44/419 (10%)

Query: 69  LPTTWMVKNGSSGGSSNEHRGKLKDINGLSADDFDMP----------QSGTCPHVES-VN 117
           + T+   +NG   G   E +G     +G   DDFD              G  P VE  V+
Sbjct: 200 ISTSLTQENGDFTGDQGEWKGS----DGPLPDDFDTSGKISQVVSCVDGGKSPRVEPCVD 255

Query: 118 VTDIFLKNSVVEETTEVVQDHLQLVTSAAPIDSCKTLKSNEDIRIDFLEDIVEAAKNNKK 177
            TD+ + NS+VE T    +   Q   S  P +SCK LK N+DI+IDFLEDIVEAA++NK+
Sbjct: 256 GTDLEVDNSLVERTPNAAEVDFQSELSGTPTNSCKNLKFNQDIKIDFLEDIVEAARHNKR 315

Query: 178 TLFLAMESSMNMMRQVXXXXXXXXXXXXXXXSAGLDILKKVEELEQMLRHAKEANDMHAG 237
           TLFL+MES MNMMR+V               SAGLDIL K  EL+QML HAK+ANDMHAG
Sbjct: 316 TLFLSMESIMNMMRKVELQEKAAEDAKEEASSAGLDILTKANELKQMLEHAKDANDMHAG 375

Query: 238 EIYGEKAILATEVRELQGRLLSLSDERDKALAILDEMNQXXXXXXXXXXXXXXXXXXXXX 297
           E+YGE+AILATEVRELQ RLLSLSDERDKALAI+DEM+Q                     
Sbjct: 376 EVYGERAILATEVRELQARLLSLSDERDKALAIIDEMHQSLEERLAAAEELKKAAEKQKL 435

Query: 298 XXXXXXXXXXXXXXXIMDKVVQESKILQRQAEENSKLREFLVDRGHVVDTLQGEISVICQ 357
                          IM +VVQESKI+Q++A+ENSKLREFL+DRG VVDTLQGEISVICQ
Sbjct: 436 EQEEAARNALAEQEAIMGQVVQESKIIQQEADENSKLREFLMDRGRVVDTLQGEISVICQ 495

Query: 358 DVRLLKERFDENVPLSKSISSTQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPR 417
           DVRLLKERFDE +PLSKSISS+QT                                 EPR
Sbjct: 496 DVRLLKERFDERIPLSKSISSSQT-------------SCILASSGSSIRSIATDLVPEPR 542

Query: 418 DTSKSPKER-------------SPTSS--IHDQSPKSQHEEDKRTDRKELLDEGWDFFE 461
           +TSKS K+R             SPT+S  I  +SPKS  +E+ RT+ +   D+ W+ FE
Sbjct: 543 ETSKSLKDRSLTPSSIDGRSPTSPTTSSFIDGRSPKSGLKEE-RTNGEVASDDDWEIFE 600