Jatropha Genome Database

JcCA0277661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0277661.10 - phase: 0 
         (250 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30101.m000383 3-isopropylmalate dehydratase, putative                 315   1e-86

>30101.m000383 3-isopropylmalate dehydratase, putative
          Length = 254

 Score =  315 bits (807), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 153/177 (86%), Positives = 157/177 (88%)

Query: 74  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYALIGLPASYETRFIEPGETKT 133
           FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYALIGLPASY+TRF+EP E KT
Sbjct: 75  FHGLCYVVGDNIDTDQIIPAEYLTLVPSNPAEYEKLGSYALIGLPASYKTRFMEPNEMKT 134

Query: 134 KYSIVIGGDNFGCGSSREHXXXXXXXXXXXXXXXESYARIFFRNSVATGEIYPLESEVRI 193
           KY+IVIGGDNFGCGSSREH               ESYARIFFRNSVATGEIYPLE+EVRI
Sbjct: 135 KYTIVIGGDNFGCGSSREHAPVALGAAGVAAVVAESYARIFFRNSVATGEIYPLETEVRI 194

Query: 194 CEECKTGDVVTIELAEGRLINHTTGKEYILKPIGDAGPVIEAGGIFAYARKTGMIPS 250
           CEECKTGDVVTIELAE RLINHTTGKEY LKPIGDAGPVIEAGGIFAYAR TGMIPS
Sbjct: 195 CEECKTGDVVTIELAENRLINHTTGKEYKLKPIGDAGPVIEAGGIFAYARSTGMIPS 251