Jatropha Genome Database

JcCA0275671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275671.10 + phase: 0 /pseudo/partial
         (252 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29602.m000211 conserved hypothetical protein                          376   e-105

>29602.m000211 conserved hypothetical protein
          Length = 348

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/201 (87%), Positives = 188/201 (93%), Gaps = 1/201 (0%)

Query: 38  DESPRRHGQVDLSVFRDAVQDCLDH-DAKPVHKSEKLKQARNSNDVQVEKYSGLRIRNQL 96
           DESPRR GQ DLSVFRDAVQDCL+H D KPV K+EKLKQ+R SN+  +EKYSGLRIRNQL
Sbjct: 40  DESPRRRGQADLSVFRDAVQDCLNHHDLKPVGKAEKLKQSRKSNEAHIEKYSGLRIRNQL 99

Query: 97  VTPAELSERLSDIRFVRLPAIKNLLVGDTLSGCWATIGVLTEKGNPRTSSVGKSYCIWKI 156
           VTPAELSER SDIRFVRLPAIKNLLVGDT+SGCWAT+GVLTEKGNPRTSSVGKSY IWKI
Sbjct: 100 VTPAELSERFSDIRFVRLPAIKNLLVGDTISGCWATVGVLTEKGNPRTSSVGKSYSIWKI 159

Query: 157 GCLDENTISLFLFGDAYQQNCKEQAGTVFALFNCTVRRDNAGGFSLSVYSPNQIIKMGTS 216
           GCLDENTISLFLFGDAYQQNCKEQAGTVFALFNCTVR+DN GGFSLS+YSPNQ++KMGTS
Sbjct: 160 GCLDENTISLFLFGDAYQQNCKEQAGTVFALFNCTVRKDNTGGFSLSLYSPNQVLKMGTS 219

Query: 217 IDYGVCKGKRKDGMSCTVIIN 237
            DYGVCKGKRKDGMSCT +IN
Sbjct: 220 TDYGVCKGKRKDGMSCTSVIN 240