Jatropha Genome Database

JcCA0275141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0275141.10 - phase: 0 /partial
         (197 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011152 replication factor C / DNA polymerase III gamma-ta...   353   2e-98
29648.m002000 replication factor C / DNA polymerase III gamma-ta...   186   6e-48
29648.m002014 replication factor C / DNA polymerase III gamma-ta...   178   1e-45
30072.m000942 replication factor C / DNA polymerase III gamma-ta...   106   8e-24
28098.m000127 Replication factor C subunit, putative                   69   2e-12
29634.m002116 replication factor C / DNA polymerase III gamma-ta...    64   5e-11
30063.m001409 replication factor C / DNA polymerase III gamma-ta...    57   6e-09
29904.m002972 chromosome transmission fidelity factor, putative        48   2e-06

>30190.m011152 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 333

 Score =  353 bits (907), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 169/178 (94%), Positives = 176/178 (98%)

Query: 15  YDIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 74
           YD+PWVEKYRP+KI DIVGNED VSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL
Sbjct: 13  YDVPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 72

Query: 75  LGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSGAQQA 134
           LGPNY+EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEADSMTSGAQQA
Sbjct: 73  LGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQA 132

Query: 135 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAEKV 192
           LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRL++VV+AEKV
Sbjct: 133 LRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLIIVVQAEKV 190


>29648.m002000 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 94/181 (51%), Positives = 118/181 (65%), Gaps = 8/181 (4%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP ++ D+   E+ V  L       N P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 78  N-YREAVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKLVILDEADSMTS 129
             Y+  VLELNASDDRGI+VVR KIK FA       Q+    P   +K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTE 129

Query: 130 GAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEA 189
            AQ ALRRTME YS  TRF   CN  S+IIEP+ SRCA  RF  LS++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICRE 189

Query: 190 E 190
           E
Sbjct: 190 E 190


>29648.m002014 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 360

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 117/175 (66%), Gaps = 2/175 (1%)

Query: 18  PWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 77
           PWVEKYRP  +AD+  + D V  +  +  +  +P+L+L GPPGTGKT++ILA+A +L G 
Sbjct: 38  PWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGV 97

Query: 78  NYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRH--KLVILDEADSMTSGAQQAL 135
            Y   +LELNASDDRGIDVVR +I+ FA  +      +   KLV+LDEAD+MT  AQ AL
Sbjct: 98  QYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFAL 157

Query: 136 RRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLMVVVEAE 190
           RR +E Y+ +TRFAL CN  +KII  +QSRC   RF+ L    +  RL  V+EAE
Sbjct: 158 RRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAE 212


>30072.m000942 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score =  106 bits (264), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 32/204 (15%)

Query: 19  WVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           WV+KYRP  +  I+ +ED    L+ +  + + P+L+  GP G+GK T I+AL  ++ GP+
Sbjct: 3   WVDKYRPKTLDQIMVHEDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFGPS 62

Query: 79  YREAVLELNA----SDDRGIDV-------------------------VRNKIKMFAQKK- 108
             +  +E       +  R IDV                         V+  IK  A+ + 
Sbjct: 63  AEKVKVENKTWKIDAGSRTIDVELTTLSSSHHIEMSPGDVGFQDRYIVQEVIKDMAKNRP 122

Query: 109 VTLPPGR--HKLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRC 166
           +    GR  +K+++L+E D ++  AQ +LRRTME YS   R  L CN+SSK+ E I+SRC
Sbjct: 123 LVDAKGRKGYKILVLNEVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSKVTEAIRSRC 182

Query: 167 ALVRFSRLSDQEILGRLMVVVEAE 190
             VR S  S+++I+  L  + + E
Sbjct: 183 LNVRISAPSEEQIVKVLEFIGKKE 206


>28098.m000127 Replication factor C subunit, putative
          Length = 661

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 32/208 (15%)

Query: 16  DIPWVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 75
           +  W +KYRP  +   + N+ T +++Q + +     + I  G PG GK T I A+  E  
Sbjct: 295 EFTWADKYRPKTLEAFICNQSTAAKVQGLIKGIECNHFIFEGSPGVGKRTMIRAMIQEAY 354

Query: 76  GPN----------YR---EAV-------------LELNASDDRGID--VVRNKIKMFAQK 107
           GP           +R   E++             +E+N SD +G +  +V   IK    K
Sbjct: 355 GPETVQTREESKAFRLRGESIGSIEVRIKVSSQHIEVNLSDMKGYEKHIVVELIKETDDK 414

Query: 108 KVTLPPGRH---KLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQS 164
           K      +H   + +IL  AD +++ A   ++  +E Y  S++F   C+  SK ++ I+ 
Sbjct: 415 KSRNYLPKHDSCRAIILYNADRLSADAVLYIKWLLERYQGSSKFFFCCSDVSK-LQAIKE 473

Query: 165 RCALVRFSRLSDQEILGRLMVVVEAEKV 192
            C LV+    S+ EI+  L  + + E +
Sbjct: 474 LCNLVQLFMPSNDEIVKVLKFIAKQEGI 501


>29634.m002116 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 779

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 92/198 (46%), Gaps = 25/198 (12%)

Query: 19  WVEKYRPNKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 78
           W +K++P+ ++  + ++     L+ +    N+P+++L GP G+GK +  +AL  E+ G  
Sbjct: 433 WADKHQPSSLSGFICHKQEAQLLKQLVFHNNIPHILLKGPSGSGKRSLAMALLCEIFGGA 492

Query: 79  YRE-------AV--------LELNASDDRG-----IDVVRNKIKMFAQ----KKVTLPPG 114
            R        AV        LELN + +       + +VR     +A        T  P 
Sbjct: 493 CRNEERAMQVAVPIASSAHHLELNVNLEPNAKHALMSLVREISNNYALAPEVSNATFKPD 552

Query: 115 RHKLVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRL 174
            +K+++L + D      Q  ++  M+ Y+++ +  L C   + I+EP+ +RC +++    
Sbjct: 553 -YKVLVLYQVDKAAEDIQHLIKWIMDCYTDACKLILCCEDDADILEPVTNRCRVIKVDSP 611

Query: 175 SDQEILGRLMVVVEAEKV 192
              EI+  L+ +   E+ 
Sbjct: 612 VTHEIMEVLIQIARKEEF 629


>30063.m001409 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 1270

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 27/195 (13%)

Query: 21  EKYRPNKIADIVGNEDTVSRL-QVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY 79
           +KY+P    +++G    V  L   I+R    P  +  GP GTGKT++    A  L   + 
Sbjct: 457 QKYKPLFFGEVIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTSTARIFASALNCIST 516

Query: 80  REA-------------------VLELNASDDRGIDVVRNKIKMFAQKKVTLPP---GRHK 117
            E                    + E++ ++ +GID VR+ +K  +Q     PP    R+K
Sbjct: 517 EETKPCGYCRDCSDFISGKARDLWEVDGTNKKGIDKVRHLLKKVSQ----WPPTGSSRYK 572

Query: 118 LVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQ 177
           + ++DE   + S    A  + +E       F         +   +QSRC    F+++ D 
Sbjct: 573 VFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFITTDPDNVPRTVQSRCQKYLFNKIKDG 632

Query: 178 EILGRLMVVVEAEKV 192
           +I+ RL  V   E +
Sbjct: 633 DIVARLRKVSSEENL 647


>29904.m002972 chromosome transmission fidelity factor, putative
          Length = 813

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 5/118 (4%)

Query: 26  NKIADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYREAVLE 85
           N+ +++ G +D  S+   +        L+L GPPG GKTT +  +A +  G  YR  V+E
Sbjct: 303 NENSNVKGIQDLWSKKSRLTGPPEQKILLLCGPPGLGKTT-LAHVAAKHCG--YR--VVE 357

Query: 86  LNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKLVILDEADSMTSGAQQALRRTMEIYS 143
           +NASDDR    +  KI    Q    +   R K +++DE D      + A+   +++ S
Sbjct: 358 VNASDDRSSSTIEAKILDVVQMNSIMADSRPKCLVIDEIDGALGDGKGAVEVILKMVS 415