Jatropha Genome Database

JcCA0274731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274731.10 - phase: 1 /partial
         (143 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30008.m000800 hypothetical protein                                    151   1e-37
29680.m001714 conserved hypothetical protein                           67   4e-12

>30008.m000800 hypothetical protein
          Length = 472

 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 104/146 (71%), Gaps = 7/146 (4%)

Query: 1   KFNG-GAPSILTESELGPSPSEVVAAMI--KNKLRIEEMESEIIGSWSLESSMEGLHSKL 57
           K NG  AP  +TESELGPS SEV A M+  KN+ ++EE ESEI+GSWSLESSMEGL SKL
Sbjct: 331 KMNGRTAPLHITESELGPSASEVAAIMVNNKNQYKVEEAESEIMGSWSLESSMEGLQSKL 390

Query: 58  ERWQIEASSVYDHSDISSLIRSSVVSGGSGPYMHHRRHSEGDGGVFSCFGSVCGVQCSIV 117
           ERW+ E   VYD S++SS   SSV +GG+    H+RR S+GDG  FSCFG+ CG++CSIV
Sbjct: 391 ERWRAELPPVYDRSELSSYPISSVAAGGN---RHNRRRSDGDGA-FSCFGTFCGMECSIV 446

Query: 118 CGRSSAKKRNRSGKRRNPSVDGLSFL 143
           CG  S+ ++     +R+PS    SFL
Sbjct: 447 CGGGSSNRKRTGRVKRSPSAGSFSFL 472


>29680.m001714 conserved hypothetical protein
          Length = 380

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 38  SEIIGSWSLESSMEGLHSKLERWQIEASSVYDHSDISSLIRSSVVSGGSGPYMHHRRHSE 97
           S II  W+   S+EGL +KLERW+ E   +YD +       +  +   S    HHRR S+
Sbjct: 283 SSIIDDWTENDSVEGLRTKLERWRTELPPIYDSN-------AKKMKSKSRRKQHHRRRSD 335

Query: 98  GDGGVFSCFGSVCGVQCSIVCGRSSAKKRNRSGKRRNPSVDGLSFL 143
            + G+F+CFG+  G + SI CG  S+KK          SVD  S+L
Sbjct: 336 -NPGLFTCFGNAFGCEISITCGGGSSKKYGNGKVCHLSSVDSQSYL 380