Jatropha Genome Database

JcCA0274451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0274451.10 - phase: 0 /pseudo/partial
         (87 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013651 branched-chain amino acid aminotransferase, putative     64   2e-11
29825.m000321 branched-chain amino acid aminotransferase, putative     51   1e-07

>30170.m013651 branched-chain amino acid aminotransferase, putative
          Length = 440

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 46  IGCRLSYKNGGLGTVSQKLSSELTNMQMGLTDDKMGWNMVLK 87
           +G RLSYK GGLGT+SQ+L S L+N+Q G+++DKMGW  VLK
Sbjct: 396 LGERLSYKGGGLGTISQQLCSALSNIQKGISEDKMGWTTVLK 437


>29825.m000321 branched-chain amino acid aminotransferase, putative
          Length = 417

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 13/65 (20%)

Query: 35  LIDTSFFFCLG-------------IGCRLSYKNGGLGTVSQKLSSELTNMQMGLTDDKMG 81
           L+D    FC G             +G R+SY   G G VSQ+L + LT +QMGLT+D+M 
Sbjct: 352 LLDADEVFCTGTAVVVSPVGSITYMGRRVSYGESGFGAVSQQLYTVLTRLQMGLTEDRMN 411

Query: 82  WNMVL 86
           W + L
Sbjct: 412 WTIEL 416