Jatropha Genome Database

JcCA0273951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273951.10 - phase: 1 /partial
         (270 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29814.m000718 tryptophan biosynthesis protein, putative               409   e-115

>29814.m000718 tryptophan biosynthesis protein, putative
          Length = 275

 Score =  409 bits (1050), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/271 (73%), Positives = 221/271 (81%), Gaps = 1/271 (0%)

Query: 1   LATGNHLQPKFVNLQTGHVSGRKMGKIYLARL-GHSKKRTACKFSPSEKVTFAHEEHEKN 59
             TG HLQPKFVNL T HV G  +GK+ L+R+  HS  R AC F+  E+VT++HEEHEKN
Sbjct: 5   FTTGAHLQPKFVNLHTRHVPGLNVGKVSLSRVRPHSNNRIACTFAQLEEVTYSHEEHEKN 64

Query: 60  WPLVKMCXXXXXXXXXXXXXXXXXXXXMIIWPNSKRSISLSVAKEISKVARSYGAKPVGV 119
            PLVKMC                    MI+WPNSKRSISLSVAKEISKVAR+ GAKPVGV
Sbjct: 65  CPLVKMCGITTARDATMAAEARANFIGMILWPNSKRSISLSVAKEISKVARANGAKPVGV 124

Query: 120 FVDDDTDTILRAADACDLEFVQLHGTGSRAAFPDLVKEKQVIYVLHANADGNLINQISDE 179
           FVDDD +TILRAADACDLEFVQLHG GSRAAF DLV++KQ++YVLHANADG+L+N+ISDE
Sbjct: 125 FVDDDAETILRAADACDLEFVQLHGNGSRAAFQDLVRQKQIVYVLHANADGDLLNKISDE 184

Query: 180 DCSMVDWVLVDSATGGSGKGFNWAQFKLPPIRSKHGWLLAGGIHSENVCEALSILKPHGV 239
           DCS+VDW+LVDSATGGSGKGFNWAQFKLPPIRSKHGWLLAGGI+  NVCEA+S LKPHGV
Sbjct: 185 DCSVVDWILVDSATGGSGKGFNWAQFKLPPIRSKHGWLLAGGINPGNVCEAVSTLKPHGV 244

Query: 240 DVSSGICDSDGIKKDQSQISSLMYAVRSVRY 270
           DVSSGIC SDGIKKDQS+ISS M AVRS  Y
Sbjct: 245 DVSSGICGSDGIKKDQSRISSFMSAVRSASY 275