Jatropha Genome Database

JcCA0273941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273941.10 - phase: 0 /partial
         (191 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29950.m001122 eukaryotic translation initiation factor 4e type, ...   317   2e-87
29693.m002098 eukaryotic translation initiation factor 4e, putative   121   2e-28
30008.m000821 eukaryotic translation initiation factor 4e, putative   114   2e-26

>29950.m001122 eukaryotic translation initiation factor 4e type,
           putative
          Length = 222

 Score =  317 bits (812), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 149/164 (90%), Positives = 155/164 (94%), Gaps = 1/164 (0%)

Query: 20  VDSTPTDII-DKEAEERQARDLKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEF 78
            DS   D+I DKE EERQAR+LKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEF
Sbjct: 17  TDSASNDLIMDKETEERQARELKAGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEF 76

Query: 79  STVEGFWVCYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYW 138
           STVEGFWVCYCHLAR S+LPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKK VS R+W
Sbjct: 77  STVEGFWVCYCHLARSSALPSPTDLHLFKEGIRPLWEDSANSNGGKWIIRFKKAVSARFW 136

Query: 139 EDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQA 182
           EDLVLALVGDQL+YGDNICGAVLSIRFNEDI+SVWNRNASDHQA
Sbjct: 137 EDLVLALVGDQLEYGDNICGAVLSIRFNEDIVSVWNRNASDHQA 180


>29693.m002098 eukaryotic translation initiation factor 4e, putative
          Length = 234

 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 3/139 (2%)

Query: 45  HPLKHKFVFWYTRRTPGVRT-QTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPTDL 103
           HPL+H++ FW+    P  ++ Q ++  +++ I  F+TVE FW  Y ++  PS L    D 
Sbjct: 59  HPLEHQWTFWFD--NPSAKSKQATWGSSMRPIYTFATVEEFWSIYNNIHHPSKLAVGADF 116

Query: 104 HLFKEGIRPLWEDSANSNGGKWIIRFKKVVSGRYWEDLVLALVGDQLDYGDNICGAVLSI 163
           H FK  I P WED   +NGGKW + F+K  S   W + +LA++G+Q + GD ICGAV+S+
Sbjct: 117 HCFKHKIEPKWEDPVCANGGKWTLTFQKGKSDGSWLNTLLAMIGEQFERGDEICGAVVSV 176

Query: 164 RFNEDILSVWNRNASDHQA 182
           R  ++ +++W +NA++  A
Sbjct: 177 RARQEKIALWTKNAANEAA 195


>30008.m000821 eukaryotic translation initiation factor 4e, putative
          Length = 201

 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 2/145 (1%)

Query: 42  AGLHPLKHKFVFWYTRRTPGVRTQTSYEDNIKKIVEFSTVEGFWVCYCHLARPSSLPSPT 101
           A  H L+ K+ FW+  ++   +   ++  +++K+  F TVE FW  Y  + +PS LP+  
Sbjct: 23  AQQHKLERKWTFWFDNQSK-PKQGAAWGTSLRKVYTFDTVEEFWCLYDQIFKPSKLPASA 81

Query: 102 DLHLFKEGIRPLWEDSANSNGGKWIIRF-KKVVSGRYWEDLVLALVGDQLDYGDNICGAV 160
           D HLFK G+ P WED   +NGGKW +   +K +    W + ++AL+G+Q D  D ICG V
Sbjct: 82  DFHLFKAGVEPKWEDPECANGGKWSVTCGRKALLDTMWLETLMALIGEQFDDSDEICGVV 141

Query: 161 LSIRFNEDILSVWNRNASDHQASDG 185
            S+R   D L++W R A++  A  G
Sbjct: 142 ASVRPRGDKLALWTRTATNEAAQMG 166