Jatropha Genome Database

JcCA0273631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0273631.10 - phase: 0 
         (272 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001111 glucosidase II beta subunit, putative                   263   7e-71
28842.m000929 glucosidase II beta subunit, putative                   143   7e-35
29950.m001160 glucosidase II beta subunit, putative                   143   9e-35

>29646.m001111 glucosidase II beta subunit, putative
          Length = 210

 Score =  263 bits (672), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 148/196 (75%), Gaps = 2/196 (1%)

Query: 1   MEMTHCRLCSFNNLFTFFIAFYFLVPSAHSKAPLIGVHPLDEKYFSSRLIKCKDGSKSFP 60
           MEMTH      N +    I+FYF +P AHSK+ L+GVHPLDEKYF+SR+I+CKDGSKSF 
Sbjct: 1   MEMTHFSFRLHNFIPFSLISFYFFIPFAHSKSSLLGVHPLDEKYFASRVIQCKDGSKSFT 60

Query: 61  RDSLNDNFCDCVDGTDEPGTSACPRGKFYCQNLGSKPQFIFSSHVNDRICDCCDGSDEYD 120
           RD  NDNFCDCVDGTDEPGTSACPRGKFYC+NLGSKPQFIFSS VND+ICDCCDGSDEYD
Sbjct: 61  RDCFNDNFCDCVDGTDEPGTSACPRGKFYCRNLGSKPQFIFSSRVNDQICDCCDGSDEYD 120

Query: 121 SGINCPNTCIMGGNLEYKARRFISATDAKESXXXXXXXXXXHKAKVTGSINRVMLTDSRV 180
           S +NCPNTC+MGG+L Y+    IS+ D  ES          HKA  TG  N+V+L DS V
Sbjct: 121 SSVNCPNTCVMGGDLNYRIGSRISSIDVNESKETVLREDLLHKA--TGDGNKVLLGDSSV 178

Query: 181 EDGDNSSRRSPWLRGD 196
            DG+N +  SPWLR D
Sbjct: 179 ADGNNPAGGSPWLRAD 194


>28842.m000929 glucosidase II beta subunit, putative
          Length = 683

 Score =  143 bits (361), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 78/114 (68%), Gaps = 2/114 (1%)

Query: 24  LVPSAHSKAPLIGVHPLDEKYF--SSRLIKCKDGSKSFPRDSLNDNFCDCVDGTDEPGTS 81
           +  SA    P +G+ P DE Y+  SS  IKC DGSK F +  LND+FCDC DG+DEPGTS
Sbjct: 22  IAKSAVPNDPFLGISPQDENYYKISSNTIKCIDGSKKFTKAQLNDDFCDCPDGSDEPGTS 81

Query: 82  ACPRGKFYCQNLGSKPQFIFSSHVNDRICDCCDGSDEYDSGINCPNTCIMGGNL 135
           ACP GKFYC+N G  P  +FSS VND ICDCCDGSDEYD  + C NTC   G +
Sbjct: 82  ACPAGKFYCRNAGHIPLLLFSSRVNDGICDCCDGSDEYDGQVKCRNTCWESGKV 135


>29950.m001160 glucosidase II beta subunit, putative
          Length = 593

 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 84/124 (67%), Gaps = 3/124 (2%)

Query: 15  FTFFIAFYFLV---PSAHSKAPLIGVHPLDEKYFSSRLIKCKDGSKSFPRDSLNDNFCDC 71
           F+  ++ + L+    S+ S   L+G+ P DE YF    IKCK+GSK F R  LND+FCDC
Sbjct: 8   FSLLMSTFSLICVTKSSSSSVSLLGIPPQDEDYFKPEFIKCKNGSKKFTRAQLNDDFCDC 67

Query: 72  VDGTDEPGTSACPRGKFYCQNLGSKPQFIFSSHVNDRICDCCDGSDEYDSGINCPNTCIM 131
            DGTDEPGTSACP+GKFYC N+G  P  + SS VND ICDCCDG+DEYD  + C NTC  
Sbjct: 68  PDGTDEPGTSACPQGKFYCHNVGHLPISLPSSRVNDGICDCCDGNDEYDGKVKCRNTCWE 127

Query: 132 GGNL 135
            G +
Sbjct: 128 AGKV 131