Jatropha Genome Database

JcCA0271431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0271431.10 + phase: 0 
         (216 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002381 conserved hypothetical protein                          235   1e-62

>29729.m002381 conserved hypothetical protein
          Length = 233

 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 137/233 (58%), Positives = 161/233 (69%), Gaps = 17/233 (7%)

Query: 1   MASVGIRCQGNCHFL--NLRGP---ENSPVGPCSVAISAGSDSSKLKRWRM---KAAMTI 52
           MAS+ IRCQ   +F   N   P    N+PV P S+AIS   D SK KRWR+    A+M  
Sbjct: 1   MASISIRCQHTSNFFSGNYSPPPDRNNAPVAPSSLAISRDFDVSKWKRWRICSSAASMKA 60

Query: 53  KKNENMISTSDSAAAN----AAVVYEKLDEWMKDSVVEIVKNLREAPLLVQVYDKGETT- 107
            +    I + D+  +     A VVYEKLD+WM  SV EIVKNL+EAPLLV VYDK ETT 
Sbjct: 61  IEKHRAIGSDDNNTSTRNNKATVVYEKLDKWMHSSVAEIVKNLKEAPLLVHVYDKDETTT 120

Query: 108 ALKTEKAVEEETWSTVKEKWGKRETPLPEGVIFVEQLDEEDPEEIT--TRAWGIVVQGKG 165
           AL TEK+V+ E W    EKW K+E PLPEGVIFVE+LDEED EE    TRAWG+VVQGK 
Sbjct: 121 ALTTEKSVQVENWGAALEKWKKKEIPLPEGVIFVERLDEEDEEEKEQITRAWGVVVQGKE 180

Query: 166 VDCGPVCYLLKTSRV-GSGLGAF-CTHFCLMKVKSFRESTRSQLKNFWLLEGQ 216
            +CGPVCYLLKTSRV GSG G   CTH+CLM+V+SFRE+  SQLKN WL++GQ
Sbjct: 181 AECGPVCYLLKTSRVAGSGFGGMCCTHYCLMRVQSFRETALSQLKNCWLIQGQ 233