Jatropha Genome Database

JcCA0270361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270361.10 + phase: 2 /partial
         (230 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000208 DNA binding protein, putative                           328   2e-90
29585.m000610 DNA binding protein, putative                           164   3e-41
27936.m000052 DNA binding protein, putative                           162   1e-40
29154.m000217 DNA binding protein, putative                           159   1e-39
30078.m002221 DNA binding protein, putative                            83   1e-16
29589.m001275 protein binding protein, putative                        77   7e-15

>29999.m000208 DNA binding protein, putative
          Length = 856

 Score =  328 bits (840), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 184/229 (80%), Gaps = 11/229 (4%)

Query: 1   LEIPKHASSSGIRKITFKFSKRKEDYDSQIAPSVAQPVGNEICQEQFYKKEYGKHYSACA 60
           LEIPKHAS++GIRKITFKFSKRKEDYD+++   ++     E     F   + G       
Sbjct: 139 LEIPKHASTTGIRKITFKFSKRKEDYDTRLNQELSPSRSRE-----FSWVDSG------T 187

Query: 61  EMLENTDRYFCAPNMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRELYGIIE 120
           EM E  DRYFCAPNMELKMSKKV+PN +P+NVKKLLSTGILDGARVKY+SP RELYGII+
Sbjct: 188 EMPETGDRYFCAPNMELKMSKKVLPNTFPSNVKKLLSTGILDGARVKYISPQRELYGIID 247

Query: 121 GGGYLCGCSLCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSAL 180
           GGGYLCGC  CNFS+VL+A+EFE HAG++TRHPNNHI+LENGKPICSIIQELK APL A+
Sbjct: 248 GGGYLCGCPSCNFSRVLTAYEFELHAGAKTRHPNNHIYLENGKPICSIIQELKAAPLGAV 307

Query: 181 GEVIKDVAGSSINGELFEIWKASFQQRNGMAGADRKCYSMLPRSPSSLG 229
            EVIKD AGSSIN E F++WKAS  Q NG+ GAD KCYSMLP SP SLG
Sbjct: 308 DEVIKDAAGSSINEEFFQVWKASLHQCNGIIGADEKCYSMLPYSPHSLG 356


>29585.m000610 DNA binding protein, putative
          Length = 492

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 98/134 (73%), Gaps = 2/134 (1%)

Query: 74  NMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE--LYGIIEGGGYLCGCSLC 131
           N + + SKKV PNN+P+NVK LLSTG+LDG  VKY+S  RE  L G+I+G GYLCGC  C
Sbjct: 340 NKDGRPSKKVAPNNFPSNVKSLLSTGMLDGVPVKYISWSREKNLKGLIKGAGYLCGCQEC 399

Query: 132 NFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSS 191
           NF+K L+A+EFE+HA  +T+HPNNHI+ ENGK I  ++QELK  P   L E I+ V GS 
Sbjct: 400 NFTKALNAYEFERHANCKTKHPNNHIYFENGKTIYGVVQELKNTPQEMLFEAIQTVTGSP 459

Query: 192 INGELFEIWKASFQ 205
           IN + F  WKAS+Q
Sbjct: 460 INQKNFRSWKASYQ 473


>27936.m000052 DNA binding protein, putative
          Length = 417

 Score =  162 bits (411), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 99/130 (76%), Gaps = 1/130 (0%)

Query: 76  ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-LYGIIEGGGYLCGCSLCNFS 134
           +LK  KKV  NN+P+NV+ LLSTG+LDG  VKY++  RE L G+I+G GYLCGC  CNFS
Sbjct: 269 DLKTCKKVPSNNFPSNVRSLLSTGMLDGVPVKYIAWSREELRGVIKGSGYLCGCQTCNFS 328

Query: 135 KVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSING 194
           KV++A+EFE+HA  +T+HPNNHI+ ENGK +  I+QEL++ P + L EVI+ + GS IN 
Sbjct: 329 KVINAYEFERHADCKTKHPNNHIYFENGKTVYGIVQELRSIPQNMLFEVIQTITGSPINQ 388

Query: 195 ELFEIWKASF 204
           + F +WK SF
Sbjct: 389 KSFRLWKESF 398


>29154.m000217 DNA binding protein, putative
          Length = 422

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 98/128 (76%), Gaps = 1/128 (0%)

Query: 76  ELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-LYGIIEGGGYLCGCSLCNFS 134
           E+K  +K  PN++P+NV+ L+STG+LDG  VKY++  RE L G+I+G GYLC C  CN+S
Sbjct: 284 EVKTGRKEAPNSFPSNVRSLISTGMLDGVPVKYIALSREELRGVIKGSGYLCSCQSCNYS 343

Query: 135 KVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSSING 194
           KVL+A+EFE+HAG +T+HPNNHI+ ENGK I  I+QEL++ P S L +VI+ V G+ IN 
Sbjct: 344 KVLNAYEFERHAGCKTKHPNNHIYFENGKTIYQIVQELRSTPESMLFDVIQTVFGAPINQ 403

Query: 195 ELFEIWKA 202
           + F IWKA
Sbjct: 404 KSFRIWKA 411


>30078.m002221 DNA binding protein, putative
          Length = 855

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 6/123 (4%)

Query: 74  NMELKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE--LYGIIEGGGYLCGCSLC 131
           N+ELKMSKK+  +N P  VK+L  TG+L+G  V Y+   +   L G I+  G LC CS C
Sbjct: 187 NLELKMSKKIALDNIPMTVKELFETGLLEGVPVVYMGGKKAFCLRGTIKDVGILCYCSFC 246

Query: 132 NFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAGSS 191
              +V+   +FE HA  + R    +I  ENGK +  ++   + +PL +L   I+    S+
Sbjct: 247 KGCRVIPPSQFEIHAIKQYRRAAQYICFENGKSLLDVLNACRNSPLDSLEATIQ----SA 302

Query: 192 ING 194
           I+G
Sbjct: 303 ISG 305


>29589.m001275 protein binding protein, putative
          Length = 1042

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 7/122 (5%)

Query: 77  LKMSKKVVPNNYPTNVKKLLSTGILDGARVKYLSPGRE-------LYGIIEGGGYLCGCS 129
           LK+ K      +PT +K LL +GIL+G +VKY+   +        L G+I G   LC C 
Sbjct: 358 LKVWKNDTSKKFPTKLKDLLDSGILEGQQVKYMRGSKARGAGETVLQGVISGSAILCFCR 417

Query: 130 LCNFSKVLSAHEFEKHAGSRTRHPNNHIHLENGKPICSIIQELKTAPLSALGEVIKDVAG 189
            C  ++V++   FE HAGS  + P  +I+LENG  +  ++   K A L  L E +    G
Sbjct: 418 SCRGNEVVTPSIFEVHAGSANKRPPEYIYLENGNTLRDVMNACKNASLETLDEALWLSTG 477

Query: 190 SS 191
            S
Sbjct: 478 CS 479