Jatropha Genome Database

JcCA0270011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270011.10 - phase: 1 /pseudo/partial
         (272 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009082 LIGULELESS1 protein, putative                           253   5e-68
30138.m003942 LIGULELESS1 protein, putative                            83   2e-16

>30174.m009082 LIGULELESS1 protein, putative
          Length = 512

 Score =  253 bits (647), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 135/231 (58%), Positives = 162/231 (70%), Gaps = 6/231 (2%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEEKSVYNSNGQFVSKSFLRLHGNGIQNTSGICPSATD 106
           M  GGIL P+ +E +NC RPVKLEEKS Y +N Q + KSFL LHGNGIQNTSGI P A++
Sbjct: 283 MRPGGILYPEIYEQANCCRPVKLEEKSCYGTNSQLLQKSFLHLHGNGIQNTSGISPPASE 342

Query: 107 EFTRLNTASTVHELAGVXXXXXXXXXXXXXXQDLSHSAGIIMARPSISQANRSHHSVGIS 166
           +FT  + +S +HELAGV              QDLSHSAGIIMARP ISQ  RSHH +G S
Sbjct: 343 DFTVFSASSNIHELAGVSHSSCALSLLSAESQDLSHSAGIIMARPLISQVGRSHHILGFS 402

Query: 167 DKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVSYAG---ELQVEPDGFLQES--DLL 221
           DK   + S EKY+ + F SSG++  K+NHMG    S AG   + Q+E D +LQ    D +
Sbjct: 403 DKS-SLGSSEKYVGDIFQSSGMSSLKTNHMGPLMGSCAGHATDGQIESDEYLQNQGPDFV 461

Query: 222 NAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVEDFSSFLTTYGA 272
           + K+C S ENG+TVDLLQLSSHLHRVEQQRNS QVKHE+E+ SSFL TYGA
Sbjct: 462 SDKFCISAENGTTVDLLQLSSHLHRVEQQRNSMQVKHELEECSSFLATYGA 512


>30138.m003942 LIGULELESS1 protein, putative
          Length = 557

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 52/267 (19%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEE------------------KSVYNSNGQFVSKSFLR 88
           +L GG + P R+   N  R +K+E+                  KS++ SN   + K FL 
Sbjct: 287 ILPGGPMHPKRYGTDNWCRQIKVEDGYFNPLSSIPVSSGHPHSKSLFPSNN--LDKVFLA 344

Query: 89  LHGNGIQNTSGICPSATD--------------------------EFTRLNTASTVHELAG 122
            HGN     +G   S +                           +F+  + AS V  ++G
Sbjct: 345 CHGNEATTATGSTLSESTNRYPHDLGGSISSSQSLIQDASLGQADFSAFDAASNVQGVSG 404

Query: 123 VXXXXXXXXXXXXXXQDLSHSAGII-MARPSISQANRSHHSVG-ISDKPFGVESLEKY-- 178
           +               +LS  +  I MA P +     SH+SV  +S+K  G+ S      
Sbjct: 405 ITNSGSALSLLSSQSHNLSSHSSGISMACPLVLPGRSSHYSVSQVSEKLVGISSQASAGA 464

Query: 179 LPNGFHSSGLNPFKSNHMGSFTVSYAGELQ--VEPDGFLQESDLLNAKYCASDENGSTVD 236
           + N F SSG +  + + +GS  +S   +    V  DG  Q S+ +NAK C S E+G+T+D
Sbjct: 465 MQNKFSSSGTSSAEGSRLGSILLSDGSDAINFVIADGMYQGSNFMNAKDCLSCEDGTTID 524

Query: 237 LLQLSSHLHRVEQQRNSAQVKHEVEDF 263
           LLQLSS L RVE+Q+ S QVK E + F
Sbjct: 525 LLQLSSQLERVERQKQSMQVKQENDAF 551