Jatropha Genome Database

JcCA0269931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269931.10 - phase: 0 /pseudo
         (263 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30324.m000023 riboflavin-specific deaminase, putative                 138   3e-33
29929.m004573 riboflavin-specific deaminase, putative                  88   4e-18
30138.m003831 conserved hypothetical protein                           53   2e-07

>30324.m000023 riboflavin-specific deaminase, putative
          Length = 110

 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 81/105 (77%)

Query: 85  DDGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAGD 144
            D  ++ R + LA + +  T+PNP VGCVIVK+G++VGEG H KAG+PHAEV ALR AG+
Sbjct: 6   QDIEWMTRALRLAARGLYTTTPNPRVGCVIVKNGQLVGEGAHLKAGEPHAEVHALRAAGE 65

Query: 145 LAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPI 189
            A  ATAYV+LEPC+H+GRTPPC +AL+ A + +VV+ M DPNP+
Sbjct: 66  QARGATAYVTLEPCSHFGRTPPCADALVNAGVSRVVVAMQDPNPL 110


>29929.m004573 riboflavin-specific deaminase, putative
          Length = 600

 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 2/160 (1%)

Query: 86  DGFYIRRCVELARKAIGCTSPNPMVGCVI-VKDGKIVGEGFHPKAGQPHAEVFALRDAGD 144
           D  +I+R  ELA K+ GCTSP+P  GCVI    G + GEG+    G   AEV A+  AG+
Sbjct: 37  DAAFIKRAAELADKSAGCTSPHPNFGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGE 96

Query: 145 LAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASSGLDRLRDAGID 204
            ++ ATAY++LEP + +G     + +L++A I +VV+G+  P   +  + +  LR+ G+ 
Sbjct: 97  WSKGATAYLNLEPGDCHGDHTAVS-SLVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQ 155

Query: 205 VTFGIEEELCKRLNEAYIHQMLTGKPFVTLR*QQYPYLII 244
           V    E+   K + +A    +L   P +     + P+ ++
Sbjct: 156 VEVLGEDLQSKIIEDARKSCLLVNAPLIHRATSRVPFSVL 195


>30138.m003831 conserved hypothetical protein
          Length = 1624

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 21/121 (17%)

Query: 84   KDDGFYIRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHP----KAGQPHAEVFAL 139
            K D  ++R  +  A+KA   T   P VG V+V+ GKI+  G++     +    HAE+  +
Sbjct: 1098 KIDEMFMREALLEAKKAAD-TWEVP-VGAVLVQHGKIIARGYNLVEELRDSTAHAEMICI 1155

Query: 140  RDAGD------LAENATAYVSLEPCNHYGRTPPCTEALIKAKIRKVVIGMVDPNPIVASS 193
            R+A +      LAE  T YV+LEPC      P C  A+++A+I  VV G   PN ++ + 
Sbjct: 1156 REASNQLRSWRLAE-TTLYVTLEPC------PMCAGAILQARIDTVVWGA--PNKLLGAD 1206

Query: 194  G 194
            G
Sbjct: 1207 G 1207