Jatropha Genome Database

JcCA0269921.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0269921.20 + phase: 0 /pseudo
         (140 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28176.m000272 Selenoprotein T precursor, putative                      78   1e-15

>28176.m000272 Selenoprotein T precursor, putative
          Length = 230

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 41/46 (89%)

Query: 80  NTVKIDFCSSCSYRGTAVTMKKMLETQFPGIHVMLANYPPPLPXRV 125
           NTV IDFC+SCSYRGTA+TMK MLE+Q+PGI+++LANYPP  P R+
Sbjct: 80  NTVNIDFCASCSYRGTAMTMKNMLESQYPGINIVLANYPPSFPKRL 125