Jatropha Genome Database

JcCA0267571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0267571.10 - phase: 2 /partial
         (272 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007101 DNA replication licensing factor MCM4, putative         459   e-130
29693.m002033 DNA replication licensing factor MCM3, putative         191   3e-49
30128.m008586 DNA replication licensing factor MCM2, putative         185   2e-47
30076.m004661 DNA replication licensing factor MCM7, putative         182   1e-46
29737.m001249 DNA replication licensing factor MCM5, putative         179   1e-45
29805.m001487 DNA replication licensing factor MCM8, putative         152   2e-37
29806.m000936 Minichromosome maintenance protein MCM, putative        135   3e-32
27967.m000046 minichromosome maintenance protein, putative             91   6e-19

>30131.m007101 DNA replication licensing factor MCM4, putative
          Length = 867

 Score =  459 bits (1180), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/293 (78%), Positives = 242/293 (82%), Gaps = 41/293 (13%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           FADKQIVRLQETPDEIPEGGTPHTVSLL+HDKLVD  KPGDRVEVTGIYRAMSVRVGPTQ
Sbjct: 295 FADKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQ 354

Query: 61  RTVKSLFK-------------TYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDD 107
           RTVKSLFK             TYIDCLHIKK DKSRM  E+PME+D+G  + E+D+QFD+
Sbjct: 355 RTVKSLFKAYMNIMVFSFCLQTYIDCLHIKKTDKSRMTTENPMEIDDGLHRTEDDVQFDE 414

Query: 108 AK----------------------------IQQLKELSKQPDIYDRLTKSLAPNIWELDD 139
           AK                            I+QLKELS+QPDIYDRLTKSLAPNIWELDD
Sbjct: 415 AKACLSIFFSSGKNLCYCCLLGSYSCLNLQIKQLKELSEQPDIYDRLTKSLAPNIWELDD 474

Query: 140 VKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRG 199
           VKRGLLCQLFGGNA+KLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRG
Sbjct: 475 VKRGLLCQLFGGNAVKLPSGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRG 534

Query: 200 SSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSEKCRSMLHEV 252
           SSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSE  RSMLHEV
Sbjct: 535 SSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEV 587


>29693.m002033 DNA replication licensing factor MCM3, putative
          Length = 769

 Score =  191 bits (485), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/252 (39%), Positives = 155/252 (61%), Gaps = 20/252 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + D Q + +QE P+    G  P TV +++ D LVD+ KPGDRV + GIY+A+    G ++
Sbjct: 183 YKDHQTLSMQEVPENSAPGQLPRTVDIIVEDDLVDSCKPGDRVAIVGIYKALP---GRSK 239

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
            +V  +F+T +   ++   +K    A  P+              +    ++ +K+++++ 
Sbjct: 240 GSVNGVFRTVVIANNVSLLNKE---ANAPI--------------YSPEDLKNIKKIAERD 282

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
           D +D L  SLAP+I+    +K+ ++  + GG    L +G   RGDIN+++VGDP  +KSQ
Sbjct: 283 DAFDLLGNSLAPSIYGHSWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQ 342

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
           LL+ I  ++P  I T+GRGSS VGLTA V+ D ETGE  LE+GA+VL+DRG+ CIDEFDK
Sbjct: 343 LLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDK 402

Query: 241 MSEKCRSMLHEV 252
           M+++ R  +HEV
Sbjct: 403 MNDQDRVAIHEV 414


>30128.m008586 DNA replication licensing factor MCM2, putative
          Length = 930

 Score =  185 bits (470), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 152/251 (60%), Gaps = 18/251 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           + + Q + LQE+P  +P G  P    +++ + L+D  +PG+ +EVTGIY   +  +    
Sbjct: 390 YRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIY-TNNFDLSLNT 448

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQP 120
           +    +F T I+  H+ K            ++ +  +  +ED +       ++++L+K P
Sbjct: 449 KNGFPVFATVIEANHVTKK----------QDLFSAYKLTQEDKE-------EIEKLAKDP 491

Query: 121 DIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQ 180
            I +R+ KS+AP+I+  +D+K  L   +FGG    +      RGDIN+LL+GDPGT+KSQ
Sbjct: 492 RIGERIIKSIAPSIYGHEDIKTALALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQ 551

Query: 181 LLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDK 240
            L+Y+ K   R +YT+G+G+SAVGLTA V KDP T E  LE GALVL+D+GIC IDEFDK
Sbjct: 552 FLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADKGICLIDEFDK 611

Query: 241 MSEKCRSMLHE 251
           M+++ R  +HE
Sbjct: 612 MNDQDRVSIHE 622


>30076.m004661 DNA replication licensing factor MCM7, putative
          Length = 718

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 152/253 (60%), Gaps = 20/253 (7%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQ 60
           F   Q  ++QE  + +P+G  P ++S+    +L   V PGD VE++GI+  +    G   
Sbjct: 223 FLKFQEAKIQELAEHVPKGHIPRSMSVHFRGELTRKVVPGDVVEISGIFLPIPY-TGFRA 281

Query: 61  RTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEE-DIQFDDAKIQQLKELSKQ 119
                +  TY++                 M V +  ++ EE +++ D+   +Q+  L++ 
Sbjct: 282 LRAGLVADTYLEA----------------MSVTHFKKKYEEYELRGDEE--EQIARLAED 323

Query: 120 PDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKS 179
            DIY++L +SLAP I+  +D+K+ LL  L G    KL  G   RGD+++ L+GDPG +KS
Sbjct: 324 GDIYNKLAQSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHLCLMGDPGVAKS 383

Query: 180 QLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFD 239
           QLL++I  ++PRG+YT+G+GSS VGLTA V KDP T E VLE GALVL+D GIC IDEFD
Sbjct: 384 QLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFD 443

Query: 240 KMSEKCRSMLHEV 252
           KM E  R+ +HEV
Sbjct: 444 KMDESDRTAIHEV 456


>29737.m001249 DNA replication licensing factor MCM5, putative
          Length = 723

 Score =  179 bits (454), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 93/252 (36%), Positives = 143/252 (56%), Gaps = 16/252 (6%)

Query: 1   FADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPT- 59
           + D+Q ++LQE P+++P G  P  + L +   LV  + PG R+ + GIY         T 
Sbjct: 218 YVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQRIVPGTRLTIIGIYSIFQAANSSTS 277

Query: 60  QRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQ 119
            R   ++ + YI  + I+             E++  + Q      F   + ++ K  + +
Sbjct: 278 HRGAVAVRQPYIRVVGIE-------------EINEANSQ--GHTAFTQEETEEFKRFASR 322

Query: 120 PDIYDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKS 179
            D+Y+ +   +AP+I+  + VK+ + C LFGG    LP G   RGDIN+LL+GDP T+KS
Sbjct: 323 TDVYESICSKIAPSIFGEEQVKKAVACLLFGGARKNLPDGVKLRGDINVLLLGDPSTAKS 382

Query: 180 QLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFD 239
           Q L+++ K +P  +YTSG+GSSA GLTA V +D  + E  LE GA+VL+D G+ CIDEFD
Sbjct: 383 QFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSSREFYLEGGAMVLADGGVVCIDEFD 442

Query: 240 KMSEKCRSMLHE 251
           KM  + R  +HE
Sbjct: 443 KMRPEDRVAIHE 454


>29805.m001487 DNA replication licensing factor MCM8, putative
          Length = 757

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/263 (36%), Positives = 150/263 (57%), Gaps = 21/263 (7%)

Query: 3   DKQIVRLQET--PDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRV---- 56
           D Q +R+QE    ++  EG  P TV   + + LVDA  PGD V VTGI R ++  V    
Sbjct: 221 DFQKIRIQELLRSEDHEEGRVPRTVECELTEDLVDACIPGDVVTVTGIIRTINNYVDIGG 280

Query: 57  GPTQRTVKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVE--EDIQFDDAKIQQLK 114
           G ++   +  +  Y++ + IK + KS+  + D  +  + +R  E  +   F    ++ + 
Sbjct: 281 GKSKGKNQGFYYLYLEVISIKNS-KSQSTSSDMQDARSNARATELSDLFSFSPKDLEFIV 339

Query: 115 ELSKQ--PDIYDRLTKSLAPNIWELDDVKRGLLCQLFGG------NALKLPSGASFRGDI 166
           + S++   D+  +L +S+ P+I+  + VK G+   LFGG      +  K+P     RGDI
Sbjct: 340 KFSEEYGSDVLRQLVQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVP----VRGDI 395

Query: 167 NILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALV 226
           ++++VGDPG  KSQLLQ    +SPRGIY  G  ++  GLT  V KD  T +   E+GA+V
Sbjct: 396 HVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTNAGLTVAVVKDSMTSDYAFEAGAMV 455

Query: 227 LSDRGICCIDEFDKMSEKCRSML 249
           L+D G+CCIDEFDKMS + +++L
Sbjct: 456 LADGGLCCIDEFDKMSAEHQALL 478


>29806.m000936 Minichromosome maintenance protein MCM, putative
          Length = 644

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 134/249 (53%), Gaps = 17/249 (6%)

Query: 3   DKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAVKPGDRVEVTGIYRAMSVRVGPTQRT 62
           D Q +++QE+   +  G  P ++ +++ D LVD VK GD V VTGI   ++ +  P  + 
Sbjct: 204 DYQEIKIQESTQVLGVGVIPRSIPVILTDDLVDIVKAGDDVIVTGI---LTAKWSPDLKD 260

Query: 63  VKSLFKTYIDCLHIKKADKSRMLAEDPMEVDNGSRQVEEDIQFDDAKIQQLKELSKQPDI 122
           V+      +   H++++++ +   + P +V     Q   D++    K +           
Sbjct: 261 VRCNLDPVLVANHVRRSNELKSDIDIPRDVIMKFEQFWSDLKDTPLKGR----------- 309

Query: 123 YDRLTKSLAPNIWELDDVKRGLLCQLFGGNALKLPSGASFRGDINILLVGDPGTSKSQLL 182
            + + + + P ++ L  VK  +   L GG      SG   RG+ ++LLVGDPGT KSQ L
Sbjct: 310 -NTILQGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKIRGESHLLLVGDPGTGKSQFL 368

Query: 183 QYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMS 242
           ++  KLS R + T+G GS+  GLT    KD   GE +LE+GALVL+D G+CCIDEFD M 
Sbjct: 369 KFAAKLSNRSVITTGLGSTGAGLTVTAVKD--GGEWMLEAGALVLADGGLCCIDEFDSMR 426

Query: 243 EKCRSMLHE 251
              R+ +HE
Sbjct: 427 GHDRATIHE 435


>27967.m000046 minichromosome maintenance protein, putative
          Length = 713

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query: 183 QYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMS 242
           +Y   + PR +YTSG+ SSA GLTA V+K+PETGE  +E+GAL+L+D G+CCIDEFDKM 
Sbjct: 283 RYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGVCCIDEFDKMD 342

Query: 243 EKCRSMLHEV 252
            K +  +HE 
Sbjct: 343 IKDQVAIHEA 352