Jatropha Genome Database

JcCA0265561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265561.10 + phase: 2 /partial
         (128 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001313 WD-repeat protein, putative                             216   2e-57

>29681.m001313 WD-repeat protein, putative
          Length = 422

 Score =  216 bits (551), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 99/128 (77%), Positives = 116/128 (90%)

Query: 1   LYRSSEQTNQRILFDIEPFGRHLGTGGQDGLVHIYDLQTGQWTSSFQAAADTVSGFSFHP 60
           LYRS+EQTNQRILFD+EP+GR+L TGGQDGLVH+YDLQ+GQW S FQAAADTV+GFSFHP
Sbjct: 295 LYRSTEQTNQRILFDVEPYGRYLATGGQDGLVHVYDLQSGQWISGFQAAADTVNGFSFHP 354

Query: 61  FLPMAASSSGHRRFQVPDDGHENLLLNDDENCASVWSFFYASAMENGTDVQVGDFNSQSE 120
            LPMAASSSGHRRFQVPDDG E+L L+ DENCA+VWSF YASA+ENG ++  G+FNSQSE
Sbjct: 355 ILPMAASSSGHRRFQVPDDGPEDLCLHGDENCATVWSFSYASAVENGANIHGGEFNSQSE 414

Query: 121 SDLHHQDS 128
           +D+ HQD+
Sbjct: 415 NDMIHQDT 422