Jatropha Genome Database

JcCA0265541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265541.20 - phase: 0 /TE/partial
         (396 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29673.m000908 hypothetical protein                                     55   5e-08
28152.m000874 conserved hypothetical protein                           52   3e-07
30068.m002537 conserved hypothetical protein                           51   1e-06
29910.m000930 RNA binding protein, putative                            50   2e-06
28153.m000273 conserved hypothetical protein                           50   2e-06
29813.m001504 nucleic acid binding protein, putative                   48   7e-06
28657.m000384 conserved hypothetical protein                           48   9e-06

>29673.m000908 hypothetical protein
          Length = 270

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 18/131 (13%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIA----------NSIEEYQLVPWESN 237
           W+LW  RN+++W  + +    IV      L  W IA          N +  + L  W+  
Sbjct: 146 WNLWIHRNEVVWNSKRKQPRQIVDGAVTYLQRWLIAQQTNPPSPDNNEVFNHNLAKWKK- 204

Query: 238 MQNRWHPLLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVT-SAPIAEA 296
                 P     KCNVDAS         AG+++R+  G  +G R     +   +  +AEA
Sbjct: 205 ------PKSGSLKCNVDASTFNQQGMIGAGYVLRNTEGALLGARITSFVQSDLNLKLAEA 258

Query: 297 IVVREALSWLK 307
           +  REALSW K
Sbjct: 259 LSFREALSWTK 269


>28152.m000874 conserved hypothetical protein
          Length = 158

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 24/141 (17%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQ--------LVPWESNMQ 239
           W +W++RN+LIW+ + + ++ I++        W  A   E YQ        L+PW+    
Sbjct: 4   WSIWSSRNELIWEGKRKGNSQILQGELNLFTNWLAAT--ETYQPSSATSSPLLPWQK--- 58

Query: 240 NRWHPLLTGFKCNVD-ASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIV 298
               P L   K NVD A+F+  +     G+++RD AG  +  + M L R+   P  EA+ 
Sbjct: 59  ----PQLGYLKYNVDAATFNGRT---GFGFVLRDHAG-LLFQQLMDLRRLR--PHTEAMG 108

Query: 299 VREALSWLKKQYQGHRLLLEN 319
           +RE LSWLK     + L L N
Sbjct: 109 LRETLSWLKANSHCNVLELVN 129


>30068.m002537 conserved hypothetical protein
          Length = 668

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 190 LWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESN--MQNRW-HPLL 246
           LWN RN  +W +Q   +  ++      L     A S +E    P   N  +  +W  P L
Sbjct: 534 LWNQRNHWVWNKQSNTTYGVISPANQLLEQRTRAQSADEEIAPPLGHNTDVTRKWTKPEL 593

Query: 247 TGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRA-MKLGRVTSAPIAEAIVVREALSW 305
              K N D +          G +VRD  GR +  R+  ++GR T A  AEA+ ++EALS+
Sbjct: 594 GWLKINTDTALFLKQGRIGLGCVVRDSNGRMIMARSERRVGRFT-AREAEALSMKEALSY 652

Query: 306 LKKQYQGHRLLLEND 320
           + K YQ  +   E D
Sbjct: 653 M-KDYQMDKCFFELD 666


>29910.m000930 RNA binding protein, putative
          Length = 446

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQNRWHPLLT 247
           W  WN RNK I++++  D    V+     L+ ++ +N       V           P   
Sbjct: 233 WCYWNLRNKFIFERKEEDVVTTVQRALVFLHGFQTSNVACSAPTVLTSKGSC----PSSD 288

Query: 248 GFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVVREALSWLK 307
             K N+DA+ D N   +  G +VRD AG  +     ++     + +AEA+ + EAL  ++
Sbjct: 289 FIKTNIDAAVDENRSLSDVGAVVRDQAGSVLFSLQKRVSLKCQSDVAEAVAILEALITVQ 348

Query: 308 KQYQGHRLLLENDNLLVIQALLKKVRITLILVPQFGIVKF 347
                 ++++E+D+L  I  L  KV         FG++ F
Sbjct: 349 DS-NFQQVIIESDSLTAINGLQSKV---------FGLLSF 378


>28153.m000273 conserved hypothetical protein
          Length = 339

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 6/115 (5%)

Query: 185 VAAWDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNM---QNR 241
           V  W LW  +N  +W  +     +I+      L  W  A  I ++Q +   S +    + 
Sbjct: 218 VICWSLWLNKNDYVWNGKKLGWKSILNRASTYLFQWGKARRINDFQQL--RSQLVGCDSV 275

Query: 242 WH-PLLTGFKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAE 295
           WH P+   +K NVDASF  +S  + AG+++RD AG  + G  +    +++  +AE
Sbjct: 276 WHKPVEGWYKMNVDASFSEHSRMSGAGFVLRDSAGAWVSGTLIPYPYISNPQVAE 330


>29813.m001504 nucleic acid binding protein, putative
          Length = 483

 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 185 VAAWDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEY-QLVPWESNMQNRWH 243
           V  W LW   N ++W  +     A+       L  W  A  + +Y QL    +     W 
Sbjct: 285 VLWWSLWTNMNDVVWNGKKLSWRAVASRASSFLFQWGKARKLTDYHQLGRHFAGGDCLWQ 344

Query: 244 PLLTG-FKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTSAPIAEAIVVREA 302
              TG +K NVDAS       + A +++RD AG  + G  +    + +  +AEA  ++EA
Sbjct: 345 KPATGKYKLNVDASSSAERGKSGASFVLRDNAGIWITGVLIIRPYIANPDVAEAWALKEA 404

Query: 303 LSWLKKQYQGHRLLLENDNLLVIQALLKKVR 333
           LSW+  +     + +E D L  I+ L +++ 
Sbjct: 405 LSWIHAKGM-EEVQIETDCLRNIELLEEELH 434


>28657.m000384 conserved hypothetical protein
          Length = 163

 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 217 LNAWRIANSIEEYQLVPWESNMQN------RWH-PLLTGFKCNVDASFDPNSVHAAAGWI 269
           +N WR+A S    +L   +S   N       W+ P L   K N+DA+   N      G +
Sbjct: 1   MNQWRVARS----KLFCLQSQNGNIALFVMVWNTPSLGSMKVNMDATIFSNPDSMGVGCV 56

Query: 270 VRDCAGRCMGGRAMKLGRVTSAPIAEAIVVREALSWLKKQYQGHRLLLENDNLLVIQALL 329
           ++D AG  +   A+         IAE + ++EALSW + + Q   ++ E D L +++ALL
Sbjct: 57  MKDHAGLFVCAMAVSFAGAYIPEIAEGLAIQEALSWARDR-QLLNVVFELDCLHIVEALL 115

Query: 330 KK 331
           +K
Sbjct: 116 RK 117