Jatropha Genome Database

JcCA0265291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265291.10 - phase: 0 /pseudo/partial
         (165 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29711.m000323 triosephosphate isomerase, putative                     142   5e-35
27383.m000156 triosephosphate isomerase, putative                      86   1e-17
30028.m000254 triosephosphate isomerase, putative                      85   2e-17

>29711.m000323 triosephosphate isomerase, putative
          Length = 313

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 74/85 (87%), Gaps = 1/85 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           DVVVAPPF+YIDQVKSSLTDRIEIS QNSWVSKGGAFTGEISVEQL DIGCKWVILGHSE
Sbjct: 96  DVVVAPPFIYIDQVKSSLTDRIEISAQNSWVSKGGAFTGEISVEQLNDIGCKWVILGHSE 155

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGV 124
           RRH+IGE DE  IG K  +   QG+
Sbjct: 156 RRHVIGENDEF-IGKKAAYALSQGL 179


>27383.m000156 triosephosphate isomerase, putative
          Length = 254

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 1/86 (1%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           +VV++PPFV++  VK SL     ++ QN WV KGGAFTGE+S E L ++   WVILGHSE
Sbjct: 39  EVVISPPFVFLPLVKDSLKPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSE 98

Query: 100 RRHIIGEKDEVQIG*KCFFEWFQGVN 125
           RR ++ E +E  +G K  +   QG+ 
Sbjct: 99  RRLLLSESNEF-VGDKVAYALSQGLK 123


>30028.m000254 triosephosphate isomerase, putative
          Length = 118

 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 52/71 (73%)

Query: 40  DVVVAPPFVYIDQVKSSLTDRIEISGQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSE 99
           +VV++PPFV++  VKS L    +++ QN WV KGGAFTGE+S E L ++   WVILGHSE
Sbjct: 39  EVVLSPPFVFLPLVKSLLRPDFQVAAQNCWVRKGGAFTGEVSAEMLLNLSIPWVILGHSE 98

Query: 100 RRHIIGEKDEV 110
           RR ++ E +E+
Sbjct: 99  RRALLNESNEL 109