Jatropha Genome Database

JcCA0264961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264961.10 - phase: 2 /TE/partial
         (240 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004557 chromodomain helicase DNA binding protein, putative      76   2e-14
29840.m000626 chromodomain helicase DNA binding protein, putative      62   2e-10

>29848.m004557 chromodomain helicase DNA binding protein, putative
          Length = 1470

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 108/251 (43%), Gaps = 36/251 (14%)

Query: 7   CQRSYHLSCLNPPLVTAPPGVWHCTFCVEKKMNMGVHSVSKGVESVWAVREVASDNE--- 63
           C  SYH  CL PP+    P  W C  CV       ++ + K ++       VA DN+   
Sbjct: 68  CTYSYHPKCLLPPIKATLPSNWRCPECVSP-----LNDIDKILDCEMRPT-VAGDNDVSK 121

Query: 64  --GKQKH-KEYLVKHQGLAHVHNLWIPEKELLL------EAPTRVAKFNRRSQA------ 108
              KQ   K+YLVK +GL+++H  W+PEKE L          T+V  F+R+  +      
Sbjct: 122 LGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMDSNNNAED 181

Query: 109 --TSWKTEWSIPQRLLQKRQLSFSKHRTNGWLVKWTGLSYDHATWELENASFLTSPEARK 166
              + + EW+   R+L  R     K     + VK+  L YD   WE E+      PE  K
Sbjct: 182 DFVAIRPEWTTVDRILACRGDDDEKE----YFVKYKELPYDECYWEFESDISAFQPEIEK 237

Query: 167 L--IQDYED--GHAKAERKDYENCHDKADKMQSLSQANELSSGDSPGAYNHYLKYVNKLR 222
              IQ         K+  KD  +   K+ + Q   Q+ E  +G S   Y   L+ +N LR
Sbjct: 238 FNRIQSKSRKLNKHKSSLKDATDSKKKSKEFQQYEQSPEFLTGGSLHPYQ--LEGLNFLR 295

Query: 223 EHWYKGHNAIV 233
             W K  + I+
Sbjct: 296 FSWSKQTHVIL 306


>29840.m000626 chromodomain helicase DNA binding protein, putative
          Length = 2257

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 16/174 (9%)

Query: 70  EYLVKHQGLAHVHNLWIPEKELLLEAPTRVAKFNRR---SQATSWKTEWSIPQRLLQKRQ 126
           E+LVK  G +H+HN WI E +L + A  ++  +  +   +     + +W  PQR++  R 
Sbjct: 527 EFLVKWVGKSHIHNSWISESQLKVLAKRKLDNYKAKYGTAVINICEDKWKQPQRVIAVRA 586

Query: 127 LSFSKHRTNGWLVKWTGLSYDHATWE-LENASFLTSPEARKLIQDYEDGH-AKAERKDYE 184
              S+  T    VKWTGL YD  TWE L+    L S     L    E     K  R +  
Sbjct: 587 ---SRDGTQEAFVKWTGLPYDECTWERLDEPLMLKSSHLVDLFDQLEQQTLEKDSRGETP 643

Query: 185 NCHDKADKMQS-----LSQANELSSGDSPGAYNHYLKYVNKLREHWYKGHNAIV 233
               + D  Q+       Q  EL  G     + H L+ +N LR  W+K  N I+
Sbjct: 644 IIKGRGDGQQNEIGTLTEQPKELKGG---SLFPHQLEALNWLRRCWHKSKNVIL 694