Jatropha Genome Database

JcCA0264441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264441.10 - phase: 2 /pseudo/partial
         (203 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28153.m000279 conserved hypothetical protein                          153   6e-38
29726.m003904 conserved hypothetical protein                          120   4e-28
30170.m014038 conserved hypothetical protein                           48   4e-06

>28153.m000279 conserved hypothetical protein
          Length = 477

 Score =  153 bits (386), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 102/185 (55%), Gaps = 17/185 (9%)

Query: 28  RVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXXXXX---------XXXXXXGDSELNTPL 78
           RV S+MPLYDILNEFQKG                                 GDS+LN PL
Sbjct: 301 RVPSNMPLYDILNEFQKGSSHMAAVVKVHAKSKNAQPTSDGEKFNEIKFANGDSQLNAPL 360

Query: 79  LNKHDDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLED 138
           L KHD KSE ++ID+EKAARP TIK+          T+ +P LS            TLED
Sbjct: 361 LTKHDGKSEHLLIDVEKAARPMTIKQQ--------KTHDIPRLSEDVEDGEVIGIITLED 412

Query: 139 VFEELLQEEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPAGGQGKQNNIP 198
           VFEELLQEEIVDETDVYVDVHKRI              PSNRRL G KPAG QGKQ+   
Sbjct: 413 VFEELLQEEIVDETDVYVDVHKRIRVVAAAAASYVARAPSNRRLPGPKPAGAQGKQSQTT 472

Query: 199 KKSGG 203
           KKSGG
Sbjct: 473 KKSGG 477


>29726.m003904 conserved hypothetical protein
          Length = 502

 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/181 (41%), Positives = 93/181 (51%), Gaps = 8/181 (4%)

Query: 28  RVTSDMPLYDILNEFQKGXXXXXXXXXXXXXXXXXXXX-------XXXXGDSELNTPLLN 80
           RV SDMPLYDILNEFQKG                               GDSEL  PLL 
Sbjct: 301 RVPSDMPLYDILNEFQKGSSHMAAVVKSKAKSKIPMTTGEKQEENKATAGDSELTIPLLV 360

Query: 81  KHDDKSESVIIDIEKAARPTTIKENLTLEPNGVATNMMPHLSXXXXXXXXXXXXTLEDVF 140
           K D+K ++VI+D+++ +R ++ K+  +   +  ATN +   S            TLEDVF
Sbjct: 361 KQDEKLDTVILDMDRVSRLSSNKQTSSQRFDA-ATNGLVQSSEDIEDGEVIGIITLEDVF 419

Query: 141 EELLQEEIVDETDVYVDVHKRIXXXXXXXXXXXXXXPSNRRLSGQKPAGGQGKQNNIPKK 200
           EELLQEEIVDETD YVDVHKRI              PS+RRL+  K  G QGK     +K
Sbjct: 420 EELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTANKGTGAQGKPGQALRK 479

Query: 201 S 201
           S
Sbjct: 480 S 480


>30170.m014038 conserved hypothetical protein
          Length = 428

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 25/28 (89%)

Query: 135 TLEDVFEELLQEEIVDETDVYVDVHKRI 162
           T+EDV EELLQEEI+DETD YV++H RI
Sbjct: 334 TMEDVIEELLQEEILDETDEYVNIHNRI 361