Jatropha Genome Database

JcCA0264101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0264101.10 + phase: 0 /partial
         (262 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29648.m002006 DNA binding protein, putative                           391   e-109
30190.m010884 Transcription regulatory protein SWI3, putative          64   7e-11

>29648.m002006 DNA binding protein, putative
          Length = 771

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/270 (74%), Positives = 216/270 (80%), Gaps = 8/270 (2%)

Query: 1   VAFLASAVGPRVXXXXXXXXXXXXXEDNRMNSERLHSREGSFHGEVANSIQQKE------ 54
           VAFLASAVGPRV             ED+RMNSERLH REGSF GEVANS+QQKE      
Sbjct: 502 VAFLASAVGPRVAAACAHASLAALSEDHRMNSERLHGREGSFQGEVANSVQQKEDKPNSS 561

Query: 55  -GQNEAEGGPVSXXXXXXXXXXXXXXXXXXXXXXXDHEEREIQRLSANIINHQLKRLELK 113
             QNEAEG P+S                       DHEEREIQRLSANIINHQLKRLELK
Sbjct: 562 WAQNEAEGAPLSTEKVKAAAKAGLSAAATKAKLFADHEEREIQRLSANIINHQLKRLELK 621

Query: 114 LKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRIGPAGSTSQMNLAGVGPSMVNNNI 173
           LKQFAEVETFLMRECEQVEKTRQRFAAERAR++STRIGPAG+TSQM+LAGV PSM NNNI
Sbjct: 622 LKQFAEVETFLMRECEQVEKTRQRFAAERARILSTRIGPAGATSQMSLAGVTPSMGNNNI 681

Query: 174 SSNRQQVMPP-SSQPNISGYGNNQQVHPHVSFMQRGQQQPMFPLGPRLPLAAIQPSSSAP 232
            S+RQQVMP  SSQP+ISGYGNNQQVHPH+SFMQRGQ QPMFP+GPRLPLAAIQPSSSAP
Sbjct: 682 GSSRQQVMPTSSSQPSISGYGNNQQVHPHMSFMQRGQPQPMFPVGPRLPLAAIQPSSSAP 741

Query: 233 SNVMFNASGSSQPSLNQMLRSVSGPSSSLG 262
           SN+M+NASG+SQPSLNQMLRSVSGPSS LG
Sbjct: 742 SNIMYNASGNSQPSLNQMLRSVSGPSSGLG 771


>30190.m010884 Transcription regulatory protein SWI3, putative
          Length = 983

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 91  EEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTRQRFAAERARMMSTRI 150
           EE +I++L+A++I  QL +LE KL  F E++  +MR  EQ++K+RQR   ERA++++TR+
Sbjct: 845 EEDQIRQLAASLIEKQLHKLETKLSFFNEMDHIIMRVREQLDKSRQRLYHERAQIIATRL 904

Query: 151 GPAGSTSQMNLAGVGPSMVNNNISSNRQQVMP 182
           G   S+S+     + P++  N I+ N    +P
Sbjct: 905 GIPPSSSR----AMPPTLPTNRIAMNIANSIP 932