Jatropha Genome Database

JcCA0263681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0263681.10 - phase: 0 /TE/partial
         (968 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30154.m001141 conserved hypothetical protein                           69   2e-11

>30154.m001141 conserved hypothetical protein
          Length = 121

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 53/88 (60%), Gaps = 2/88 (2%)

Query: 875 ITAANEKYKAVADKHWXYKSFTIGDXVMVYLRKER--RGAQKKLDWKKIGLFQIHKKIND 932
           I  AN KYK VA+ H  +K F +GD V+++LRKER   G   K   KK G  +I K++N 
Sbjct: 4   IEKANAKYKVVAEMHRKHKVFDVGDEVIIFLRKERIPIGHSNKFKPKKYGPCKIIKEVNG 63

Query: 933 NAYVLNLPEDMKISRTFNVAGLFPFYSD 960
           NAYV +    + I +TFNVA L  F SD
Sbjct: 64  NAYVADFSNWLNIFKTFNVADLLLFLSD 91