Jatropha Genome Database

JcCA0262351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262351.10 - phase: 0 
         (165 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29703.m001484 conserved hypothetical protein                          251   8e-68

>29703.m001484 conserved hypothetical protein
          Length = 166

 Score =  251 bits (642), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 123/161 (76%), Positives = 132/161 (81%)

Query: 1   MDQKYQNTHVKLLAFDLLSLTQLPXXXXXXXXXXXRLGKSFSRAEILGIVTSREHKPNKF 60
           MDQK+QN HVKLLA DL+SLTQ P              KSFSRAEILGIVTS EHKP+KF
Sbjct: 1   MDQKFQNIHVKLLALDLVSLTQTPPFSPSDPISFSHANKSFSRAEILGIVTSCEHKPHKF 60

Query: 61  LKFTIDDGTGCVSCVLWLNQLTSPYFSRRSPPDVRLIADMASHFASEIKIGVVACVRGRI 120
           LKFTIDDGTGCVSC+LWLNQLTSPYFSRRS P VRLIA  A+HFAS IKIGVVA VRGRI
Sbjct: 61  LKFTIDDGTGCVSCILWLNQLTSPYFSRRSTPAVRLIASTATHFASLIKIGVVARVRGRI 120

Query: 121 TSYRGAVQITVSDVVIERDPNAEILHWLNCIRLARNCYDVS 161
           TSYRG VQIT SDVVIERDPNAEI HWL C++LAR+CY V+
Sbjct: 121 TSYRGTVQITASDVVIERDPNAEIFHWLQCVKLARSCYHVN 161