Jatropha Genome Database

JcCA0262331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262331.10 - phase: 0 
         (78 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002599 conserved hypothetical protein                           65   7e-12

>30068.m002599 conserved hypothetical protein
          Length = 77

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 1  MKGACTLXXXXXXXXXXXXXXXXXGDRDVAFYPCSNEGSTP-ANGRHRVPGGCA-SLDKE 58
          MKG CTL                 GD DVAF+P SN+GS+    G+      CA S DKE
Sbjct: 1  MKGTCTLVASVLAASTVAFSA---GDSDVAFHPSSNQGSSSSVMGKLGASNACAPSSDKE 57

Query: 59 KFAPRFDGLRFIETLITAHR 78
          KFAPRFDGLRFIETLITAHR
Sbjct: 58 KFAPRFDGLRFIETLITAHR 77