Jatropha Genome Database

JcCA0262011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0262011.10 + phase: 0 
         (174 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001117 acyl-CoA oxidase, putative                              320   2e-88
29713.m000178 acyl-CoA oxidase, putative                               53   8e-08

>29646.m001117 acyl-CoA oxidase, putative
          Length = 625

 Score =  320 bits (820), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/173 (88%), Positives = 163/173 (94%)

Query: 1   MNGPCPVIPSQLTSAILRSSQFQINAFCLRERDLLSRFAAEVSQHQANGESKERAFIMSY 60
           MNGPC +IPSQLTS ILRSSQFQI AFCLRERDLL+RFA EVSQHQA GESKE AF++ Y
Sbjct: 452 MNGPCLIIPSQLTSTILRSSQFQIGAFCLRERDLLNRFATEVSQHQAKGESKENAFMLGY 511

Query: 61  QLAEDLGRAFSDRLILQTFIEAETTVSAGSLKNVLGLLRSMYALICLEEDSAFLRYGYLS 120
           QLAEDLGRAFSDR ILQTFIEAET+VS G+LKNVLGLLRSMYA+ICLEED+AFLRYGYLS
Sbjct: 512 QLAEDLGRAFSDRAILQTFIEAETSVSDGALKNVLGLLRSMYAMICLEEDAAFLRYGYLS 571

Query: 121 TESAAAVRKEVAKLCSELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSVK 173
           TE+AAAVRKEV KLC+ELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSVK
Sbjct: 572 TENAAAVRKEVMKLCNELRPHALALVSSFGIPDAFLSPIAFNWIDANSWSSVK 624


>29713.m000178 acyl-CoA oxidase, putative
          Length = 235

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 5/165 (3%)

Query: 1   MNGPCPVIPSQLTSAILRSSQFQINAFCLRERDLLSRFAAEVSQHQAN-GESKERAFIMS 59
           ++ P PV         LR  +FQ++AF  R   LL   A  + +H    G        ++
Sbjct: 60  LSQPNPVTARWEGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLN 119

Query: 60  YQLAEDLGRAFSDRLILQTFIEAETTVSAGSLKNVLGLLRSMYALICLEEDSAFLR-YGY 118
           + L   L  +  + +IL  FIEA       S +  L L+  +YAL  +  D    R   Y
Sbjct: 120 HLLT--LAESHIESVILAKFIEAVQNCPDPSSRAALKLVCDLYALDRIWSDIGTYRNVDY 177

Query: 119 LSTESAAAVRKEVAKLCSELRPHALALVSSFGIPDAFL-SPIAFN 162
           ++   A A+ K    LC ++R  A  L+ +F +PD    +PIA N
Sbjct: 178 VAPNKAKAIHKLTEYLCFQVRNIARELIDAFDLPDHVTRAPIAMN 222