Jatropha Genome Database

JcCA0261291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261291.10 - phase: 1 /pseudo/partial
         (68 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29673.m000908 hypothetical protein                                     59   6e-10
30225.m001681 conserved hypothetical protein                           52   6e-08
29607.m000244 hypothetical protein                                     52   7e-08
29705.m000588 conserved hypothetical protein                           51   1e-07
28637.m000209 RNA binding protein, putative                            49   5e-07
30068.m002537 conserved hypothetical protein                           47   2e-06
29608.m000209 conserved hypothetical protein                           47   2e-06
29769.m000452 conserved hypothetical protein                           47   2e-06

>29673.m000908 hypothetical protein
          Length = 270

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINA-CQSLSRGVTDVKLAEALSF 60
           W KP  G  KCN DA+  +    +G G+VLR+  G+++ A   S  +   ++KLAEALSF
Sbjct: 202 WKKPKSGSLKCNVDASTFNQQGMIGAGYVLRNTEGALLGARITSFVQSDLNLKLAEALSF 261

Query: 61  RQALT*TK 68
           R+AL+ TK
Sbjct: 262 REALSWTK 269


>30225.m001681 conserved hypothetical protein
          Length = 185

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 34/63 (53%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           WSKPP    KCN DA    N  +VG G +L+DE  +V+ A         D  LAEAL+ R
Sbjct: 115 WSKPPSRYLKCNMDATSFPNQDKVGFGCLLKDEFRAVVAARNGFLHCAIDPTLAEALTCR 174

Query: 62  QAL 64
            AL
Sbjct: 175 DAL 177


>29607.m000244 hypothetical protein
          Length = 329

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 5   PPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFRQAL 64
           P  G  KCN D AV + + R G G V+RD  GS +      S G+ +VKLAEA+  R+A+
Sbjct: 171 PQPGFVKCNVDGAVFTASGRSGFGMVIRDSAGSFVMGADGSSPGLFNVKLAEAIGLREAV 230


>29705.m000588 conserved hypothetical protein
          Length = 126

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 1  LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSF 60
          +WSKPP+G  KCN DA       R G   VLRD  GS I+A    S       +AEA+  
Sbjct: 27 IWSKPPHGMYKCNVDAVTFYG--RTGFALVLRDHDGSFISASLGSSPVSVSPLVAEAMGL 84

Query: 61 RQALT 65
          R+ LT
Sbjct: 85 REVLT 89


>28637.m000209 RNA binding protein, putative
          Length = 197

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINA-CQSLSRGVTDVKLAEALSF 60
           W KP  G PKCN DAA+ +    +G   VLR+  G+ I A   S  +   + KLAE  SF
Sbjct: 134 WKKPKTGWPKCNIDAAIFNQQGMIGADCVLRNTEGAFIGARINSFVQSDLNPKLAEDPSF 193

Query: 61  RQAL 64
           R+ +
Sbjct: 194 REQI 197


>30068.m002537 conserved hypothetical protein
          Length = 668

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W+KP  G  K N D A+     R+G+G V+RD +G +I A      G    + AEALS +
Sbjct: 588 WTKPELGWLKINTDTALFLKQGRIGLGCVVRDSNGRMIMARSERRVGRFTAREAEALSMK 647

Query: 62  QALT 65
           +AL+
Sbjct: 648 EALS 651


>29608.m000209 conserved hypothetical protein
          Length = 273

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 1   LWSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSF 60
           +W+ P  G  KCN D  V    +R+G G++ +++ G+   A   L  G  D ++AEALS 
Sbjct: 128 IWTCPVEGWLKCNIDVVVFVANNRLGFGFIFQNDSGTFRAATNGLISGPLDPQVAEALSL 187

Query: 61  RQAL 64
           R+ L
Sbjct: 188 REDL 191


>29769.m000452 conserved hypothetical protein
          Length = 180

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 32/64 (50%)

Query: 2   WSKPPYGRPKCNCDAAVLSNASRVGVGWVLRDEHGSVINACQSLSRGVTDVKLAEALSFR 61
           W K   G  KCN DA++      +  G V RD  G  + A   L   + D  LAEALS R
Sbjct: 93  WQKSGIGYVKCNMDASIYLTKGNIAFGMVTRDADGRFLEARNGLINAIMDPLLAEALSCR 152

Query: 62  QALT 65
           +AL+
Sbjct: 153 EALS 156