Jatropha Genome Database

JcCA0261271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261271.10 + phase: 0 
         (134 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002536 conserved hypothetical protein                           90   4e-19

>30068.m002536 conserved hypothetical protein
          Length = 382

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 55/103 (53%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVA+SVVHEVLG RVQDVDQPIVDYIINV                           CV
Sbjct: 1   MTEVATSVVHEVLGRRVQDVDQPIVDYIINVLADEDFDFGEEGEGAFDAIGELLVGAGCV 60

Query: 61  SDFEECRL----------------QKPTVRSLTAPIRMNDGMD 87
           SDF+ECRL                 KP VRSLT P RMN+GMD
Sbjct: 61  SDFDECRLVCSKLCDRFGKHGLVKPKPAVRSLTTPFRMNEGMD 103