Jatropha Genome Database

JcCA0261101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261101.10 - phase: 0 /partial
         (475 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003377 neurobeachin, putative                                  729   0.0  
29883.m001961 conserved hypothetical protein                           68   1e-11
29596.m000722 conserved hypothetical protein                           67   1e-11
30174.m008917 nucleotide binding protein, putative                     66   3e-11

>29889.m003377 neurobeachin, putative
          Length = 1575

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/475 (74%), Positives = 401/475 (84%), Gaps = 9/475 (1%)

Query: 1   MANLAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVMLPS 60
           M +LAVPSWA SPEEFIKLHRDALESE VS QIHHWIDITFGYKMSGQAAVAAKNVMLPS
Sbjct: 511 MTDLAVPSWAGSPEEFIKLHRDALESEHVSSQIHHWIDITFGYKMSGQAAVAAKNVMLPS 570

Query: 61  SEPTMPRPVGRRQLFTRPHPVRLGSLRKKHSATNTSAANRCLSSTVESETPLLSETAYLQ 120
           SEP MPR VGRRQLFTRPHP RLGS RKKH           + + VE +TP L + +YL+
Sbjct: 571 SEPMMPRSVGRRQLFTRPHPARLGSARKKHYG---------VINEVEGKTPPLFQASYLE 621

Query: 121 ALEETSGFSEHAGHLSPQYYYDAENLVKDMFSGDESVNESIEKSVSKPLEIGKNYGLQCN 180
            LEE S FSEHA HLSPQY YD +++ K +   +ES  ES +KS+ KP E  K++GL  +
Sbjct: 622 KLEEASAFSEHATHLSPQYCYDPKSIKKVICFAEESAVESSDKSIYKPPETIKSHGLPSD 681

Query: 181 INLSYLLEHMEVEVENTMGYQELQHWRRQPSYSKNSKEDFSKDIFAIGSVLAELYLKRPL 240
           +NLSYLLEH+EV++E ++GYQE   WR++PSYS    EDF+KD+F++G VLAELYLK+PL
Sbjct: 682 VNLSYLLEHIEVDIEGSIGYQEFLLWRQKPSYSSKFSEDFAKDMFSVGCVLAELYLKKPL 741

Query: 241 FNSTSLATYIERDILPEFFQELPPHAKVLVEACIQKDWRRRPSAKSLLESPYFPTTVKSS 300
           FNSTSLATY E  +LPE   ELPPHAKVLVEACIQK+W RRPSAK +LESPYFP TV+SS
Sbjct: 742 FNSTSLATYTESGVLPESMLELPPHAKVLVEACIQKEWDRRPSAKCVLESPYFPATVRSS 801

Query: 301 YMFIAPLQLIASNGSRLQYAANFAKQGALKAMGSFAAEMCLPYCIPLVVNPQSDTEAEWA 360
           Y+FIAPLQL+A++GSRLQYAANFAKQGALKAMG+FAAEMC P+C+PLVVN Q DTEAEWA
Sbjct: 802 YLFIAPLQLLANDGSRLQYAANFAKQGALKAMGAFAAEMCAPFCLPLVVNTQFDTEAEWA 861

Query: 361 YTLLKEFIKCLTPKAVKMAVLPAIQKILQARYSHLKVSLLQGSFVQEMWNLIGKQVYLEN 420
           Y LLKEFIKCLTPKAVK  VLPAIQKILQA YSHLKV LLQGSFVQE+WNL+GKQ YLE 
Sbjct: 862 YVLLKEFIKCLTPKAVKKLVLPAIQKILQASYSHLKVLLLQGSFVQEIWNLMGKQAYLET 921

Query: 421 IHPLVISNLHVAPHKSSAAVASVLLIGTSEELGVPITVHQTILPLIHCFGKGLCP 475
           IHPLVISNL++APHKSSAAVASVLLIGTSEELGVPITV QTILPLIHCFGKGLCP
Sbjct: 922 IHPLVISNLYIAPHKSSAAVASVLLIGTSEELGVPITVSQTILPLIHCFGKGLCP 976


>29883.m001961 conserved hypothetical protein
          Length = 3591

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 21/108 (19%)

Query: 1    MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVML- 58
            + ++ +P WA  S  EFI+ HR+ALES+ VS  +HHWID+ FGYK  G+AA  A NV   
Sbjct: 3151 VGDVVLPPWAKGSAREFIRKHREALESDYVSENLHHWIDLIFGYKQRGKAAEEAVNVFYH 3210

Query: 59   ----------PSSEPTMPRPV-------GR--RQLFTRPHPVRLGSLR 87
                        ++P M   +       G+  +QLF +PH  R    R
Sbjct: 3211 YTYEGSVDIDSVTDPAMKASILAQINHFGQTPKQLFLKPHGKRRSDRR 3258


>29596.m000722 conserved hypothetical protein
          Length = 3206

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)

Query: 1    MANLAVPSWA-SSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVM 57
            + ++ +P WA +SPE FI  +R+ALESE VS  +HHWID+ FGYK  G+ AV A N+ 
Sbjct: 2720 IGDVCLPPWAKASPELFINKNREALESEYVSSNLHHWIDLIFGYKQRGKPAVEAANIF 2777


>30174.m008917 nucleotide binding protein, putative
          Length = 2920

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 1    MANLAVPSWASSPEEFIKLHRDALESERVSCQIHHWIDITFGYKMSGQAAVAAKNVML 58
            + ++ +P WA +P +FI  HR ALESE VS  +H WID+ FGYK  G+ A+ A NV  
Sbjct: 2359 LDSVNLPPWAENPVDFIHKHRMALESEHVSAHLHEWIDLIFGYKQRGKEAILANNVFF 2416