Jatropha Genome Database

JcCA0261081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261081.10 - phase: 0 /pseudo/partial
         (281 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008993 flap endonuclease-1, putative                           324   3e-89
29822.m003372 DNA-repair protein UVH3, putative                        73   2e-13
30174.m008956 DNA binding protein, putative                            60   8e-10
30026.m001514 exonuclease, putative                                    59   2e-09
29654.m000301 exonuclease, putative                                    52   3e-07

>30128.m008993 flap endonuclease-1, putative
          Length = 345

 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/180 (85%), Positives = 164/180 (91%), Gaps = 1/180 (0%)

Query: 23  CSYSRRADATEDLAQALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSE 82
            SYSRRADATE+LA A+ETG KEDIEK+SKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSE
Sbjct: 62  TSYSRRADATEELAAAVETGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSE 121

Query: 83  AEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNL 142
           AEA+CAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRK+PVMEFE  KILEELNL
Sbjct: 122 AEAECAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKVPVMEFETSKILEELNL 181

Query: 143 NMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETILENINRDSLFVAYSDTKYQ 202
            MDQFIDLCILSGCDYCDSIRGIGG+TALKLIRQHG IE ILEN+N++   +   D  YQ
Sbjct: 182 TMDQFIDLCILSGCDYCDSIRGIGGMTALKLIRQHGSIENILENMNKERYQIP-EDWPYQ 240


>29822.m003372 DNA-repair protein UVH3, putative
          Length = 1641

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)

Query: 49   KYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLT 108
            K  +    V+ +   +C+ LL++ G+P I AP EAEAQCA +  +  V  V ++D D   
Sbjct: 954  KLERNAESVSSEMFAECQELLQMFGLPYIIAPMEAEAQCAYMELANLVDGVVTDDSDVFL 1013

Query: 109  FGAPRFLRHLMDPSSRKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDYCDSIRGIGGL 168
            FGA    +++ D   RK  V  + +K I  EL L  ++ I + +L G DY + I GIG +
Sbjct: 1014 FGARNVYKNIFD--DRKY-VETYFMKDIERELGLTREKLIRMALLLGSDYTEGISGIGIV 1070

Query: 169  TALKLI 174
             A++++
Sbjct: 1071 NAIEVV 1076


>30174.m008956 DNA binding protein, putative
          Length = 609

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)

Query: 63  EDCKRLLRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPS 122
           ++C  LL L G+PV++A  EAEA CA L   G V A  + D D+  FGA   ++ +  P+
Sbjct: 121 KECVELLELFGMPVLKANGEAEALCAQLNSQGLVDACITADSDAFLFGAKCVIKSIK-PN 179

Query: 123 SRKIPVMEFEIKKILEELNLNMDQFIDLCILSGCDY-CDSIRGIGGLTALKLIR 175
           S++ P   +++  I   L L     I + +L G D+  + ++GIG  TAL+ ++
Sbjct: 180 SKE-PFECYQMSDIESGLALKRKHLIAIALLVGNDHDLNGVQGIGVDTALRFVQ 232


>30026.m001514 exonuclease, putative
          Length = 629

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 9/132 (6%)

Query: 69  LRLMGVPVIEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPV 128
           L+   V  + AP EA+AQ   L  S +V AV +ED D + FG PR +   MD   + I  
Sbjct: 107 LKQENVSYVVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRIV-FKMDKYGQGI-- 163

Query: 129 MEFEIKKILEELNLNMDQF-----IDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETI 183
            EF+  ++     L+   F     + +CILSGCDY  S+ G+G   A  LI +    + +
Sbjct: 164 -EFQYSRLQLNKELSFSGFTHEMILQMCILSGCDYLQSLPGMGLKRAHALITKFKSYDKV 222

Query: 184 LENINRDSLFVA 195
           ++++   ++ V 
Sbjct: 223 IKHLKYSTISVP 234


>29654.m000301 exonuclease, putative
          Length = 576

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)

Query: 27  RRADATEDLA-QALETGIKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEA 85
           RR ++   LA + LE G      ++ +R V +T        ++LR   V  + AP EA+A
Sbjct: 97  RRRESNRKLAMEKLEQGNVNAANEFFQRAVSITPLMAHQLIQILRSEKVEFVVAPYEADA 156

Query: 86  QCAAL----CKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSRKIPVMEFEIKKILEEL- 140
           Q A L     + G + AV +ED D L +G    +  +     R     E  + K+   + 
Sbjct: 157 QLAYLSSLDAEKGGIAAVITEDSDLLAYGCQATVFKM----DRFGNGEEIVLDKVYNAVA 212

Query: 141 ------NLNMDQFIDLCILSGCDYCDSIRGIGGLTALKLIRQHGCIETIL 184
                 + + + F  +C+L+GCD+  S+ GIG + A   + ++  ++ +L
Sbjct: 213 CKPSFQHFDRELFTGMCVLAGCDFLPSVPGIGIVKAHSFVVKYRNLDRVL 262