Jatropha Genome Database

JcCA0260771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0260771.10 + phase: 0 /partial
         (277 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29640.m000411 Trigger factor, putative                                505   e-144

>29640.m000411 Trigger factor, putative
          Length = 542

 Score =  505 bits (1301), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/278 (86%), Positives = 267/278 (96%), Gaps = 1/278 (0%)

Query: 1   IGDVAVLDISATKVDEDNSSI-NIPDAESKGFHFDTEDGDKVLPGFLDSIIGMQRGETKS 59
           IGDVAV+DISATK DED S + NIPDAESKGFHFDTEDGDKVLPGFLDSIIG+QRGETKS
Sbjct: 265 IGDVAVIDISATKTDEDKSKVQNIPDAESKGFHFDTEDGDKVLPGFLDSIIGIQRGETKS 324

Query: 60  FPLVFPESWNQENLRGVQAQFTVECKELFYRDMPELDDSLADKLLPGCTTLQQVKESLLQ 119
           FPLVFPESWNQE+LRGV AQFTVECKELFYRD+PELDDSLADKL+PGCTTLQ+VKESLLQ
Sbjct: 325 FPLVFPESWNQESLRGVHAQFTVECKELFYRDVPELDDSLADKLVPGCTTLQEVKESLLQ 384

Query: 120 KCQEVERTARDQATDNAILDQLHKMVEIDIPRSLFEEQGRQFYGAKLLEVQAKMKLNEEQ 179
           +C EVER+A+DQATDNAILDQL KMVE+DIP+SLFEEQGRQ YGA+LL++QA M+LNE+Q
Sbjct: 385 RCLEVERSAKDQATDNAILDQLCKMVEVDIPKSLFEEQGRQLYGARLLQIQANMRLNEQQ 444

Query: 180 LASLSSPKAVNEYLENQKQNITKVIKQNLAVGDIFKRENLEFSTDDLVKEVENSISEFKR 239
           LASLSSPKAVNE+LENQK+NITKVIKQNLAVGDIFK ENL+FST++LVKEVENSI+EFKR
Sbjct: 445 LASLSSPKAVNEFLENQKENITKVIKQNLAVGDIFKHENLQFSTEELVKEVENSIAEFKR 504

Query: 240 HKQEYDEERVRDQVQEILEGAKVLEWLKEHAEIQYITK 277
           HKQEY+EE VRDQVQEILEGAKVLEWL+EHAEIQY+T+
Sbjct: 505 HKQEYNEESVRDQVQEILEGAKVLEWLREHAEIQYVTR 542