Jatropha Genome Database
- JcCA0259681.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0259681.10 + phase: 0 /partial
(133 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29593.m000174 conserved hypothetical protein 159 3e-40
29726.m004014 nucleic acid binding protein, putative 51 2e-07
30147.m013813 nucleic acid binding protein, putative 50 2e-07
29620.m000559 zinc finger protein, putative 49 6e-07
30128.m009030 nucleic acid binding protein, putative 49 9e-07
29647.m002009 nucleic acid binding protein, putative 48 1e-06
>29593.m000174 conserved hypothetical protein
Length = 500
Score = 159 bits (403), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/77 (89%), Positives = 71/77 (92%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYRFESASNLPIYPQRPGEKDCAHYMLTRTCKFGDSCKF 60
MGAHN IGQ+EAWYST+ L KR RFESASN IYPQRPGEKDCAHYMLTRTCKFGDSCKF
Sbjct: 94 MGAHNTIGQTEAWYSTNYLTKRSRFESASNYSIYPQRPGEKDCAHYMLTRTCKFGDSCKF 153
Query: 61 DHPVWVPEGGIPNWKEV 77
DHPVWVPEGGIPNWKEV
Sbjct: 154 DHPVWVPEGGIPNWKEV 170
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
IYPQRPG +C +YM T CKFG+ C+F HP+
Sbjct: 387 IYPQRPGHAECDYYMKTGECKFGERCRFHHPI 418
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 35 PQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
P+R G C +YM T TCK+G +CKFDHP
Sbjct: 441 PRREGAVHCPYYMKTGTCKYGATCKFDHP 469
>29726.m004014 nucleic acid binding protein, putative
Length = 481
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 32 PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
P +P+RPG+ +C +YM T CKFG SCK+ HP
Sbjct: 295 PSFPERPGQPECQYYMKTGDCKFGSSCKYHHP 326
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP RPGEK+C +Y+ T CKFG +CKF HP
Sbjct: 136 YPLRPGEKECTYYVKTGQCKFGVTCKFHHP 165
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 32 PIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
P YP+RP E DC +Y+ T C +G C+F+HP
Sbjct: 42 PGYPERPEEADCIYYLRTGFCGYGSRCRFNHP 73
>30147.m013813 nucleic acid binding protein, putative
Length = 495
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPV 64
YP RP +DC++YM T TCKFG +CKF+HPV
Sbjct: 141 YPVRPEAEDCSYYMKTGTCKFGSNCKFNHPV 171
>29620.m000559 zinc finger protein, putative
Length = 456
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEG 69
YP RPGE DC +Y+ T C +G++C+F+HP + +G
Sbjct: 51 YPDRPGEPDCVYYLRTGLCGYGNNCRFNHPPYAAQG 86
>30128.m009030 nucleic acid binding protein, putative
Length = 448
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP----VWVPEGGIPNWKEV 77
YP RP E +CA+Y+ T CKFG +CKF HP V VP G P + V
Sbjct: 145 YPLRPNEIECAYYLRTGQCKFGSTCKFHHPQPTNVMVPLRGSPVYPTV 192
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+ PGE DC++Y+ T C+FG +C+F+HP
Sbjct: 54 YPEHPGEPDCSYYIRTGLCRFGATCRFNHP 83
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 33 IYPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
++P+RPG+ +C YM T CKFG C+F HP
Sbjct: 304 VFPERPGQPECQFYMKTGDCKFGAVCRFHHP 334
>29647.m002009 nucleic acid binding protein, putative
Length = 478
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
Query: 1 MGAHNIIGQSEAWYSTSSLAKRYR------------FESASNLPIYPQRPGEKDCAHYML 48
+GA ++ G ++ ST +LA Y +P+RPGE +C +Y+
Sbjct: 254 VGATSLYGVTQLSSSTPALAGPYPSPSSAAAAAAAPLSGTQKEQTFPERPGEPECQYYLR 313
Query: 49 TRTCKFGDSCKFDHP 63
T CKFG SC++ HP
Sbjct: 314 TGDCKFGSSCRYHHP 328
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 4/41 (9%)
Query: 27 SASNLPI----YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
S S++P+ YP RPGE +C++Y+ T CKFG +CKF HP
Sbjct: 128 SLSHVPLNTHGYPLRPGENECSYYLKTGQCKFGITCKFHHP 168
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 34 YPQRPGEKDCAHYMLTRTCKFGDSCKFDHP 63
YP+R GE C Y+ T TCKFG SCKF HP
Sbjct: 93 YPERIGEPSCEFYLKTGTCKFGASCKFHHP 122