Jatropha Genome Database

JcCA0257621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257621.10 - phase: 0 
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29738.m000999 RNA binding protein, putative                           102   4e-23

>29738.m000999 RNA binding protein, putative
          Length = 1744

 Score =  102 bits (254), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 68/83 (81%), Gaps = 5/83 (6%)

Query: 9  MEFIVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKL 68
          M+ ++SSLS SFK+VPL AIP +LDCILASTGLS +SLF    DSF +++K+FIKE +KL
Sbjct: 1  MDTLISSLSRSFKKVPLSAIPAILDCILASTGLSPSSLF----DSFLHVTKEFIKE-EKL 55

Query: 69 DSGCCDFLMSIVGALCHLLKKLG 91
          D   CD+L+S+VGALCHLLKK G
Sbjct: 56 DYSHCDYLISMVGALCHLLKKPG 78