Jatropha Genome Database

JcCA0255541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0255541.10 + phase: 0 
         (90 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29841.m002859 GTP binding protein, putative                           134   8e-33
29927.m000612 conserved hypothetical protein                           84   9e-18
30073.m002197 GTP binding protein, putative                            70   2e-13
30190.m011188 GTP binding protein, putative                            53   2e-08
30073.m002200 GTP binding protein, putative                            53   3e-08
30190.m011189 GTP binding protein, putative                            50   2e-07

>29841.m002859 GTP binding protein, putative
          Length = 206

 Score =  134 bits (337), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/76 (85%), Positives = 71/76 (93%), Gaps = 1/76 (1%)

Query: 1  MKGGLVVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSY-GPDTRDTGEV 59
          MK GL+VDSG+IYQ+EK LTVLKTSLFFANDGFTVYDC+GELVFRVDSY GPD R+T EV
Sbjct: 1  MKAGLIVDSGYIYQEEKHLTVLKTSLFFANDGFTVYDCRGELVFRVDSYGGPDNRETAEV 60

Query: 60 VLMDAHGRCLLTVRKK 75
          VLMDA+GRCLLTVRKK
Sbjct: 61 VLMDANGRCLLTVRKK 76


>29927.m000612 conserved hypothetical protein
          Length = 218

 Score = 84.3 bits (207), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 55/75 (73%)

Query: 1  MKGGLVVDSGFIYQDEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVV 60
          M GG VVD  F ++ E  LTV KTS+F+  D F VYD +GE++FR DSYGP+++   E+V
Sbjct: 1  MTGGAVVDEKFCFKVEIDLTVRKTSVFYPGDAFLVYDPQGEIIFRFDSYGPESQPKDELV 60

Query: 61 LMDAHGRCLLTVRKK 75
          LMDA G+CLL++ +K
Sbjct: 61 LMDASGKCLLSLLRK 75


>30073.m002197 GTP binding protein, putative
          Length = 215

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 43/61 (70%)

Query: 15 DEKLLTVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRK 74
          D  +LTV K SL F  +GFTVYD  G LVFRVD+Y   +   GE+VLMDA G+ LLT+R+
Sbjct: 28 DAIVLTVWKKSLLFNCNGFTVYDGSGNLVFRVDNYMAGSGANGEIVLMDADGKPLLTIRR 87

Query: 75 K 75
          K
Sbjct: 88 K 88


>30190.m011188 GTP binding protein, putative
          Length = 209

 Score = 53.1 bits (126), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 20 TVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRKKVIY 78
          T+   SL    +G TVY+  GE+V+RVD+Y  D + + EV LMD  GR L T+RK++++
Sbjct: 37 TIWMKSLVMQANGCTVYNDNGEIVYRVDNY--DKKGSSEVYLMDLKGRVLFTIRKQLLF 93


>30073.m002200 GTP binding protein, putative
          Length = 224

 Score = 52.8 bits (125), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 19  LTVLKTSL--FFANDGFTVYDCKGELVFRVDSYGPDTRDTGE-VVLMDAHGRCLLTVRKK 75
           LTV K S   F   DGFTV+D +G+LVFRVD+Y    R  G  +VLMD  G  LLT++ +
Sbjct: 35  LTVWKRSSMSFQGTDGFTVFDTQGKLVFRVDNYSRKNRHVGSGLVLMDGVGNALLTLKPQ 94

Query: 76  VIYISLPF 83
           ++ +   +
Sbjct: 95  IMSMQYQW 102


>30190.m011189 GTP binding protein, putative
          Length = 195

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 20 TVLKTSLFFANDGFTVYDCKGELVFRVDSYGPDTRDTGEVVLMDAHGRCLLTVRKK 75
          TV   SL    +G TV+D  GE+V+RV++Y  D + + EV LMD  GR L+T+R+K
Sbjct: 26 TVWMKSLVCHTNGCTVFDTNGEIVYRVENY--DKKCSSEVYLMDLRGRVLVTIRRK 79