Jatropha Genome Database

JcCA0254841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254841.10 - phase: 2 /partial/short
         (45 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006089 isoamylase, putative                                     80   3e-16

>29908.m006089 isoamylase, putative
          Length = 783

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 42/46 (91%), Gaps = 1/46 (2%)

Query: 1   SKLNMF-MADTNLKSPDDFVPEGVPGIGSVYNVAPYSSILLEAKLT 45
           SK + F +ADTNLKSPDDFVPEGVPGIGS YNVAPYSSILLEAKLT
Sbjct: 738 SKRSWFRVADTNLKSPDDFVPEGVPGIGSAYNVAPYSSILLEAKLT 783