Jatropha Genome Database

JcCA0254141.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254141.20 + phase: 0 /partial
         (352 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003589 ATP synthase gamma chain 2, chloroplast, putative       563   e-161
30027.m000853 ATP synthase gamma chain 2, chloroplast, putative       454   e-128
29941.m000218 ATP synthase f1, gamma subunit, putative                 61   6e-10

>29842.m003589 ATP synthase gamma chain 2, chloroplast, putative
          Length = 376

 Score =  563 bits (1450), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/352 (79%), Positives = 291/352 (82%)

Query: 1   MSCSNLTMWVXXXXXXXXXXXLAFRSSLNPFQLPXXXXXXXXXXXXXXXTQIHCGLRELR 60
           MSCSNLTMWV           L+F SSLNPFQLP               T IHC LR+LR
Sbjct: 1   MSCSNLTMWVSSKPSLSDTSSLSFCSSLNPFQLPTHSSGSNSPSRSSSATPIHCNLRDLR 60

Query: 61  TRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDIDAP 120
           TRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDID P
Sbjct: 61  TRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDIDVP 120

Query: 121 LTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVISVGKKGNSYF 180
           LTK RPVKKVALVV TGDRGLCGGFNN            LKDLG++YT+ISVGKKGNSYF
Sbjct: 121 LTKNRPVKKVALVVVTGDRGLCGGFNNNIIKKAESRIAELKDLGVDYTIISVGKKGNSYF 180

Query: 181 LRRPYIPVDRFLEGTSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIH 240
           +RRPYIPVDRFLEGT+LPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIH
Sbjct: 181 IRRPYIPVDRFLEGTNLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPVIH 240

Query: 241 TLLPLSPKGEICDINGNCVDAAEDEFFRLTTREGKLTVERDVVRTQTADFSPILQFEQDP 300
           TLLPLSP+GEICDINGNCVDAAEDEFFRLTT+EGKLTVERDVVRTQT DFSPILQFEQDP
Sbjct: 241 TLLPLSPEGEICDINGNCVDAAEDEFFRLTTKEGKLTVERDVVRTQTVDFSPILQFEQDP 300

Query: 301 VQILDALLPLYLNSQIXXXXXXXXXXXXXXRMSAMSNATDNASELKKNLSRV 352
           VQILDALLPLYLNSQI              RMSAMSNA+DNA+ELKK LS V
Sbjct: 301 VQILDALLPLYLNSQILKALQESLASELAARMSAMSNASDNAAELKKTLSIV 352


>30027.m000853 ATP synthase gamma chain 2, chloroplast, putative
          Length = 381

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/352 (63%), Positives = 262/352 (74%), Gaps = 2/352 (0%)

Query: 1   MSCSNLTMWVXXXXXXXXXXXLAFRSSLNPFQ--LPXXXXXXXXXXXXXXXTQIHCGLRE 58
           MS SNLTMWV           L+FR   NPF+                   + IHCGLRE
Sbjct: 1   MSSSNLTMWVNPKPSKFETSSLSFRFQANPFRHLARISHLYNTFSQSYSYSSPIHCGLRE 60

Query: 59  LRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDID 118
           LR RI +VKNTQKITEAMKLVAAAK+RRAQEAV+NGRPF+E+L+EVLY+INEQLQ EDID
Sbjct: 61  LRERISTVKNTQKITEAMKLVAAAKIRRAQEAVINGRPFAESLLEVLYHINEQLQLEDID 120

Query: 119 APLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVISVGKKGNS 178
            PLT VRPVK+VALVV TGDRGLCGGFNN            L+++GL+ +VISVGKKGN+
Sbjct: 121 VPLTNVRPVKRVALVVVTGDRGLCGGFNNAVLRKAETRMMELENMGLDCSVISVGKKGNA 180

Query: 179 YFLRRPYIPVDRFLEGTSLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPV 238
           YF RR    VD+F+EG S PTAKEAQ IADDVFSLFVSEEVDKVEL+YTKFVSLVKSDPV
Sbjct: 181 YFKRRGNACVDKFIEGDSFPTAKEAQLIADDVFSLFVSEEVDKVELMYTKFVSLVKSDPV 240

Query: 239 IHTLLPLSPKGEICDINGNCVDAAEDEFFRLTTREGKLTVERDVVRTQTADFSPILQFEQ 298
           I TLLPLSP+G +CD+NG CVDAA+DEFFRLT++EGKL VER+  +       P++QFEQ
Sbjct: 241 IRTLLPLSPRGGVCDVNGKCVDAADDEFFRLTSKEGKLAVERESGKANREGILPLMQFEQ 300

Query: 299 DPVQILDALLPLYLNSQIXXXXXXXXXXXXXXRMSAMSNATDNASELKKNLS 350
           DP+QILDA++PLYLNSQI              RM+AMSNATDNA +L+K+LS
Sbjct: 301 DPIQILDAMMPLYLNSQILRALQESLASELAARMNAMSNATDNAVDLQKSLS 352


>29941.m000218 ATP synthase f1, gamma subunit, putative
          Length = 326

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 34/218 (15%)

Query: 59  LRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTEDID 118
           +R R+ S+KN QKIT+AMK+VAA+K+R  Q    N R   +    +L            D
Sbjct: 51  VRNRMKSIKNIQKITKAMKMVAASKLRAIQTRAENSRGLWQPFTALLG-----------D 99

Query: 119 APLTKVRPVKKVALVVCTGDRGLCGGFNNXXXXXXXXXXXXLKDLGLNYTVISVGKKGNS 178
           AP      VKK  +V  + D+GLCGG N+                      + +G+K  +
Sbjct: 100 APSVD---VKKNVIVTISSDKGLCGGINSTSVKTSRALHKLTSGPEKETKYVILGEKAKA 156

Query: 179 YFLRRPYIPVDRFLEGTSLP----TAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVK 234
             +R     ++  +  T L        +   +ADD+     + E + + +++ KF S+V 
Sbjct: 157 QLIRDSKKDIELCI--TELQKNPLNYTQVSVLADDILK---NVEFEALRVVFNKFQSVVS 211

Query: 235 SDPVIHTLLPLSPK---------GEICDINGNCVDAAE 263
             P + T+  LSP+         G++ D++   ++  E
Sbjct: 212 FLPTMSTV--LSPEVMEREAESGGKLGDLDSYEIEGGE 247