Jatropha Genome Database

JcCA0254131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0254131.20 + phase: 0 /partial
         (424 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002400 DNA mismatch repair protein muts2, putative             564   e-161

>29851.m002400 DNA mismatch repair protein muts2, putative
          Length = 873

 Score =  564 bits (1454), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/427 (67%), Positives = 329/427 (77%), Gaps = 36/427 (8%)

Query: 1   MEVSYHFISVSKSPILF-SKPFKTFKPLFSLQN--SPDSISPQLSLQSETLKVLEWSSLC 57
           ME+SY FIS+  SPI F SKPF T KPLFSL N  + +S S +L+LQSE LK LEW+SLC
Sbjct: 1   MELSYPFISIRNSPIFFFSKPFNTLKPLFSLPNPNAANSSSTRLALQSEALKALEWNSLC 60

Query: 58  DRLSYFTSTSMGNSVARNASIPIGKSLQESRKLLDQTAAALAVMQSGPLDFSEIEDVTGI 117
           DRLS FTSTSMG+S AR+ASIPIG+S+QESR LLDQT AALA+MQ G LDFS IED+TGI
Sbjct: 61  DRLSPFTSTSMGHSAARSASIPIGESIQESRMLLDQTTAALAMMQYGTLDFSAIEDITGI 120

Query: 118 VDSAVSGNLLTIGEXXXXXXXXXXXXXXXXXXKDGGDCLERYGPLLEILQRCSFQIELEQ 177
           V+SAVSGNLLT+ E                  KDGGDCLER  PLLEI + C+ QI+LEQ
Sbjct: 121 VNSAVSGNLLTVSELCAVRRTLEAAKAVLERLKDGGDCLERSYPLLEIFRSCNLQIQLEQ 180

Query: 178 KIGFCLDCNLSIILDRASEELEIIRSERKRNMENLDTLLKGISTRIFQAGGADRPLVTKR 237
           KIGFC+DCNL IILDRASE+LE+IR ERK+ MENLD LLKGISTRIFQAGG DRP VTKR
Sbjct: 181 KIGFCIDCNLLIILDRASEDLELIRYERKKTMENLDNLLKGISTRIFQAGGIDRPFVTKR 240

Query: 238 RSRLCVGVRATHRHLIRNGVILDVSGSGATYFMEPDDAVELNNLEVMLSNSERAEEIVIL 297
           RSRLCVGVRATHR+LI +GVILDVSGSGATYF+EP DAVELNNLEVMLSNSERAEEI IL
Sbjct: 241 RSRLCVGVRATHRYLIPDGVILDVSGSGATYFVEPGDAVELNNLEVMLSNSERAEEIAIL 300

Query: 298 SLLTSEIAQSEKEIKHLLDGILKVDLAFSRAAYAQQMNAICPILTSEGCEGELSGGAHYP 357
           SLLTSEIA+SE++IK LLDGIL+VDLAF+RAAYA+Q+N +CP  TSEG EGE S  A+Y 
Sbjct: 301 SLLTSEIAESERDIKKLLDGILEVDLAFARAAYARQINGVCPTFTSEGYEGEPSSRANYA 360

Query: 358 LLIDIEGIRHPLLIGSSQRSLSDFLGSNSQNSTELNYGDGVMATERLSETVSEFPVPINI 417
           L IDIEGI+HPLL+GSSQ+                                 +FPVPINI
Sbjct: 361 LSIDIEGIQHPLLLGSSQQ---------------------------------KFPVPINI 387

Query: 418 KVECGTK 424
           KVECGT+
Sbjct: 388 KVECGTR 394