Jatropha Genome Database

JcCA0252151.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0252151.10 - phase: 1 /partial
         (91 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29728.m000796 alpha-(1,4)-fucosyltransferase, putative                127   8e-31

>29728.m000796 alpha-(1,4)-fucosyltransferase, putative
          Length = 420

 Score =  127 bits (320), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 67/73 (91%), Gaps = 2/73 (2%)

Query: 12  ASLQVVGGD-SDC-SDLKMGHVSVLVKGWTWIPDNLDNLYSCRCGLTCLWTKSAVLADKP 69
           ASLQVVGGD S C ++LKM HVSVLVKGWTWIPDNLDNLYSCRCGL+CLWTKS+VLADKP
Sbjct: 101 ASLQVVGGDDSGCNTELKMKHVSVLVKGWTWIPDNLDNLYSCRCGLSCLWTKSSVLADKP 160

Query: 70  DTLLFETTTPPRR 82
           D LLFETTTPP R
Sbjct: 161 DALLFETTTPPLR 173